Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00253 ATGGATGAAGAATTGGTCGATGAGGCAACACAATTGGAGGTTGCTGAGGATTCACAGCGCCAGAACAAAGATTTACCACACACGGAATGCCGAAAAATCTTACAATCCCAAGAAGCCCGTATCCCTGTTAAGCAGGACTACTCGCACTTACCACCTCGGGAATATGAAGACGTTCTACATGGTAAAAATGTAGTTGAAGGTATTGACCATGCAGATACATCACAGCATCCTGGTCTAAGCCTTTTTATGGATGATGCTGATGCTATGGTCGAAGAATTAACAGTAAAAAGTTACAATGGCTCAAGCTTGGATATTGGTACATCAAACAACGGAGGGCAAATGTTTAATCGGCTGAACCATTGGCAGAATTTTTATCAGGTAGCAAGTAATTCAGGAATTGGAAATTCACTAAGTGATATTGGTACTAGAAACAGTGTTCAGGCCACATCCAGTGCTCGGGAGGATATTGGATCCTCATCTTTCCCAGAGATGCTGGCTAGAAAGTCTCTCAGTGATGGCCAGAGCAATGTCATGGAGCACTTGGCAGCTGCTGAAAATAAAGAGGGTGCAGGTGATGTTCGTCAAGGAATACGGACAAAAATTATATCCCAATCAGGGTTTGCAGAGTTTTTCATAAAAAATACACTGAAGGGTAAGGGTATTGTCTATAAAGGTCCGTTGTATGATCCCATCTGTGTTCAGTCCAGAGGGCAAAGCCGGATGAAGACTAACATTGGCACAGAACAGAATCAGATGAGAACCAGCATTGGCACAGAGCAGAATCAGACGAGGACCAGCATTGGCACTGATCAGAATCAAACTAGGACCAGCATTGGCACAGGTCAGAATCAGATGAAGATTGGCATTGGCACAGATCAGAATCAGATGAAGATTAGCATTGGCACAGATCAGAATCAGATGAAGAATAACACTGGTACTGATCAGAAACAGATGAAGACTGGTATTGTTACTCACTTGAACTCTAATCAATCTGTGGGCCATGGTTCCAAAACTACCAATTTTTCTTCTCAATGTGGTGCTATGCTTAGATCTGGCAGGTCTGAATGTAATGGTGTGACTTTGAGAGAATGGCTGAAACATGGGCACCACAAAACTAGCAAAGTGGAAAGTTTGAATATATTTAGGAAGATTGTGGATTTGGTGGACAACTCTCACTCTCAGGGAGTTGCATTGCATAACCTGTGTCCATCTTATATTAAATTGTCACCATCAAACCAAGTCATGTACCTTGGCTTACCTGTTCAAAAACGAATGGTGGATGGTGTTGTAAATTCTGAAGTTGTCCACGTAGATAGTTCTGTTGTTAGAAAAAGACTGTCAGAGCAAGTAACATATCCCTCTCATGATTTGGGGTCAAAGAAGCAAAGGCTTAATGAGAATTTGAGAGTTACCGCTGGTGACTTGGGTCTTGAAACTGCAAGTGATAGGAAACTTCACAGTGGATCACAAGACTTTTACAACGAATATGAGGAAGATGCCCAATTTTCTAAATATAACATTGGAAGAATGTCTAGCATCCCTCATGTATCTAATGCAGGTCAGATTCCATTGATATCATGTGAAAAATTTGAAAATAAATGGTACACAAGTCCTGAGGGAGGTTACACAACATCATCAAATATCTACTGTCTTGGTGTCCTCCTTTTTGAGTTACTTGGTCATTTTGACTCTGAAAGAACACATATTGCAGCAATGTCTGATCTTCGACATAGGATTCTTCCTCCAATTTTCCTATCAGAAAACCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGCTGCATCCAGAACCGTCCTCACGTCCAACAACAAGGGAAATCCTTCAGTCTGAATTGATTAATGGACTGCAAGAGTTTTTTAGTGAGGAACTTTCATCAAGTATTGACCAAGAAGATGCAGAATCAGAATTGTTATTGCATTTCCTTGTTTTGCTAAAAGAGCAGAAGCAGAACAGTGCTTTCAAATTGGCAGAAGAAATCAAGTGCTTGGAATCAGATATAGGAGAGGTGGACAGGAGACACGACTCCAGAAATTCCTTGGTTTCCTCTGGCTTGCAGAATGATTACTCTTGTCAGAAAGAGATTATACCTCTTAAGAAGGAATCTTTAAGTTTAGAAATGCTGCCCTCAATATCCCCAATCTCTAATTCAAATGAAGTGAGATTGATGAGAAATATATGCCATCTTGAAAGTGCTTATTTTTCCATGAGATCCAAACTTCAGCTTTCTGAAACAGATGCCTCAACTCACCCTGATAAAGATGTACTAAGAAATCGTGAGAACTGGCATGTGGCCCAAAAGAGTGAGGAACAACCTAAAAGGAAAGATACTTTAGGGACATTCTTTGATGGTTTGTGCAAGTATGCACGTTATTGCAAGTTTGAAGTGCTGGGTGTTCTAAGAAATGCTGATTTTAACAATCCTGCAAATGTCATTTGCTCTTTAAGCTTTGATCGGGATGCAGATTACTTTGCCTCAGCTGGGATATCTAAGAAAATAAAAATATTTGAGTTTAGTGCACTTTGCAATGACTCTGTTGATATCCATTATCCCGTGGTTGAGATGTCAAACAGATCAAAACTCAGCTGTGTTTGCTGGAATAACTATATTAAAAACTATCTTGCGTCTACAGATTATGACGGTATAGTCAAGTTATGGGATGCAAGTACAGGTCAAGAATTTTCTCAATTCACTGAACACGAGAAGAGGGCTTGGTCTGTTGACTTCTCTGTTGTATGCCCCACGAAGTTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGTGAGAGGAACTGTTTAGGCACAATCAGGAATGTTGCTAATGTCTGCTGTGTTCAATTCTCTTCTCATTCCTCCCATTTGCTGGCCTTTGGATCTGCGGATTACTCAACATATTGCTATGATCTTCGCAATCTTAGAAGTCCCTGGTGTGTATTGGCAGGCCATCGTAAGGCCGTTAGCTATGTCAAATTCTTGGACTCCGAAACACTTGTTTCTGCTTCTACTGACAATACATTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTCGGTACATCCATTAATGCTTGCAGCCTAACCCTGTCAGGACACACCAACGAAAAGAATTTTGTGGGTCTGTCAGTGGCTGATGGATATATAGCGTGTGGTTCAGAAACAAATGAGGTCTATTCCTACTATAGATCACTTCCCATGCCAATCACTTCGCACAAATTTGGGTCCATGGATCCCATTTCTGGTAAAGACACAGAGGATGACAATGGGCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCCGACATGCTTATTGCAGCCAATTCAAGTGGATGTGTGAAAGTGTTGCAGATGGTTTAA 3384 0.4116 MDEELVDEATQLEVAEDSQRQNKDLPHTECRKILQSQEARIPVKQDYSHLPPREYEDVLHGKNVVEGIDHADTSQHPGLSLFMDDADAMVEELTVKSYNGSSLDIGTSNNGGQMFNRLNHWQNFYQVASNSGIGNSLSDIGTRNSVQATSSAREDIGSSSFPEMLARKSLSDGQSNVMEHLAAAENKEGAGDVRQGIRTKIISQSGFAEFFIKNTLKGKGIVYKGPLYDPICVQSRGQSRMKTNIGTEQNQMRTSIGTEQNQTRTSIGTDQNQTRTSIGTGQNQMKIGIGTDQNQMKISIGTDQNQMKNNTGTDQKQMKTGIVTHLNSNQSVGHGSKTTNFSSQCGAMLRSGRSECNGVTLREWLKHGHHKTSKVESLNIFRKIVDLVDNSHSQGVALHNLCPSYIKLSPSNQVMYLGLPVQKRMVDGVVNSEVVHVDSSVVRKRLSEQVTYPSHDLGSKKQRLNENLRVTAGDLGLETASDRKLHSGSQDFYNEYEEDAQFSKYNIGRMSSIPHVSNAGQIPLISCEKFENKWYTSPEGGYTTSSNIYCLGVLLFELLGHFDSERTHIAAMSDLRHRILPPIFLSENPKEAGFCLWLLHPEPSSRPTTREILQSELINGLQEFFSEELSSSIDQEDAESELLLHFLVLLKEQKQNSAFKLAEEIKCLESDIGEVDRRHDSRNSLVSSGLQNDYSCQKEIIPLKKESLSLEMLPSISPISNSNEVRLMRNICHLESAYFSMRSKLQLSETDASTHPDKDVLRNRENWHVAQKSEEQPKRKDTLGTFFDGLCKYARYCKFEVLGVLRNADFNNPANVICSLSFDRDADYFASAGISKKIKIFEFSALCNDSVDIHYPVVEMSNRSKLSCVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSVVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSSHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGTSINACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYSYYRSLPMPITSHKFGSMDPISGKDTEDDNGQFVSSVCWRGKSDMLIAANSSGCVKVLQMV 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00253 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 859 901 IPR001680 GO:0005515
Phco4g00253 1127 SMART WD40_4 798 842 IPR001680 GO:0005515
Phco4g00253 1127 SMART WD40_4 1086 1125 IPR001680 GO:0005515
Phco4g00253 1127 SMART WD40_4 853 892 IPR001680 GO:0005515
Phco4g00253 1127 SMART WD40_4 938 977 IPR001680 GO:0005515
Phco4g00253 1127 SMART WD40_4 981 1019 IPR001680 GO:0005515
Phco4g00253 1127 SMART WD40_4 895 935 IPR001680 GO:0005515
Phco4g00253 1127 SMART WD40_4 1030 1069 IPR001680 GO:0005515
Phco4g00253 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 988 1028 IPR001680 GO:0005515
Phco4g00253 1127 MobiDBLite consensus disorder prediction 254 278 - -
Phco4g00253 1127 Pfam WD domain, G-beta repeat 897 935 IPR001680 GO:0005515
Phco4g00253 1127 Pfam WD domain, G-beta repeat 987 1019 IPR001680 GO:0005515
Phco4g00253 1127 Gene3D - 786 1127 IPR015943 GO:0005515
Phco4g00253 1127 PANTHER PROTEIN SPA1-RELATED 2 7 1127 IPR044630 GO:0009640
Phco4g00253 1127 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 785 1127 - -
Phco4g00253 1127 MobiDBLite consensus disorder prediction 1 26 - -
Phco4g00253 1127 ProSitePatterns Trp-Asp (WD) repeats signature. 1006 1020 IPR019775 -
Phco4g00253 1127 SUPERFAMILY WD40 repeat-like 811 1124 IPR036322 GO:0005515
Phco4g00253 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 902 944 IPR001680 GO:0005515
Phco4g00253 1127 SUPERFAMILY Protein kinase-like (PK-like) 356 624 IPR011009 -
Phco4g00253 1127 ProSitePatterns Trp-Asp (WD) repeats signature. 879 893 IPR019775 -
Phco4g00253 1127 Coils Coil 651 671 - -
Phco4g00253 1127 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 988 1021 - -
Phco4g00253 1127 PRINTS G protein beta WD-40 repeat signature 922 936 IPR020472 -
Phco4g00253 1127 PRINTS G protein beta WD-40 repeat signature 879 893 IPR020472 -
Phco4g00253 1127 PRINTS G protein beta WD-40 repeat signature 1006 1020 IPR020472 -
Phco4g00253 1127 Gene3D Transferase(Phosphotransferase) domain 1 356 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00253 Phco-Chr4 1605235 1614085 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00253 4 1605235 1614085 Phco4g00253 4 1605235 1614085 ECH
Phco4g00253 4 1605235 1614085 Phco4g03367 4 54072562 54078813 PCT