Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03363 ATGGCTTCATCTACCATCAAGCAAACAGAACACCTCAACCGCACCAAACTCCTCGTCCAAGAAGACACCCTTTTGAAGAACCATCACCATCCCAAACTCGTGCGAATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGAGGACCAGCCTTCCGTGTCCTCCACACGCCGCCGAGTCAAAAGCTTCGTCAACGAGATTGCCATCCACGGCGCCGGCGTTAAAGTTGTTTCAAGGAAAAGAAAGGTGAAGTCTGCCAACGCTCAGGCGCTCCGGCGGCGGACGGAGGCGAGGAAGTTCCGCGGAGTGAGGCAGCGACCGTGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGTCGCGCCGCGTTCGGCTGTGGCTGGGCACCTACGACACTGCCGAGGAAGCCGCCATTGTGTACGACAACGCGGCCATTCAGCTGCGTGGCGCCGACGCGCTCACTAATTTCATAACGCCGCCGGCGGAGGGCAGAAAAAACGGTTACTGCTCCGGCGAGGAGGAGTTGCGCTCCCCCACTTCGGTTCTTCGGTGCTGTTGGGCGTCGGAGGAAGTTGAATCGGTAACAGCAAACGACGTGGTTGGTCCCGCGAGCGAGTGTGAACACTCATGCGTTTCGGAGGATAGTAAGTCGAAAGATGAGACAGTGTTTGGTATTCCTGATGATGTGGCATTCGGTTTTGAGAGCACTTTGGGTATGTTTGACGAGTGCGTTAACAACGTTGCACAGAGCAGTGGTATATTCTTGGGCGATGAATTTGATTTAAGTGGATGTTTTGTTAGTGAAAAAGAGAATTTAGATTTGGGTTTTGGTTTTGGTTTTGGGTCTACGAGTTGGCAAAGGGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTCTGA 927 0.5437 MASSTIKQTEHLNRTKLLVQEDTLLKNHHHPKLVRIRVTDADATDSSSDEDQPSVSSTRRRVKSFVNEIAIHGAGVKVVSRKRKVKSANAQALRRRTEARKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEGRKNGYCSGEEELRSPTSVLRCCWASEEVESVTANDVVGPASECEHSCVSEDSKSKDETVFGIPDDVAFGFESTLGMFDECVNNVAQSSGIFLGDEFDLSGCFVSEKENLDLGFGFGFGSTSWQRECDNFQDIGDLFVWDPLVAL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03363 308 CDD AP2 101 157 IPR001471 GO:0003700|GO:0006355
Phco4g03363 308 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 189 - -
Phco4g03363 308 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Phco4g03363 308 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
Phco4g03363 308 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Phco4g03363 308 MobiDBLite consensus disorder prediction 37 59 - -
Phco4g03363 308 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Phco4g03363 308 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Phco4g03363 308 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Phco4g03363 308 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Phco4g03363 308 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03363 Phco-Chr4 54061803 54062729 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco4g03363 AP2 3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00257 4 1630015 1630965 Phco4g03363 4 54061803 54062729 PCT