Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00257 ATGACTACGCCACCCACCAAGTACACACAACACACCAAACTACTCACACTCTCGCACACCCAACAGCACCCTCCAAAAAACCCATATCCCAGACTCGTCAGAATAACCGTCACAGACACCGACGCCACCGACTCCTCCAGCGACGAAGAACAACCCTTCCACTCTTCCAAGCGCCTCCGTCAACGGCACAGGAAATTCATCAACGAGATTTCTATCGAGCCCTGCGCCGCCGAGAACAATGGCGTCTTTTCGAGGAAGAGAGTTCGAAGGAGGAGCGTGGTGGGGAAAGGCAGAGTTGCAGAGACGCCGCGCGTGTCGACGGTTAAGAAATTCCGCGGAGTGAGACAAAGGCCGTGGGGAAAATGGGCGGCGGAGATACGAGACCCGTCGCGACGCGTGAGGTTATGGTTGGGTACCTACGACACTGCCGAGGAAGCCGCCTTAGTGTACGACAACGCGGCTATTAAGCTGCGTGGACCCGACGCGCTCACCAATTTCATAACGCCACCTGCCACGTGGCCCAACGAAGACCCGACGACGGTGTCCAACGGTTACGCCTCCGCCGAGGAAACTCAGAACAAAAGCCTGTTTTCTCCCACTTCCGTACTTCACTCTTGTTCTTTGTCTGAGGAAGCTGAATCCATAACAGGCAAAGACGATGACTACTCCTGCGTGTCCGAGAGTTCCAAGGCCAAAGCTGAGTCACTGTTTCCGATTCCGAGCGAACTAAAATTTGAGTTCCAGGACTGTTTGGCGGCGCCGGAGATGTTCGGCGAGTTCGATAGCGCTGCAGCGGCTGAGAGTGTGTTGTTCTCCGACGATGATTGGCCTGGTGTGTTTCTCACTGCTTGTGAGGATTTGGGTTTGAAAAGTTGGCATACCGACAGAAATCATGAGTTTTTCCAAGATATCGACGATTTATTTGTCTCCGATCCCCTTCTTGCTCTCTGA 951 0.5384 MTTPPTKYTQHTKLLTLSHTQQHPPKNPYPRLVRITVTDTDATDSSSDEEQPFHSSKRLRQRHRKFINEISIEPCAAENNGVFSRKRVRRRSVVGKGRVAETPRVSTVKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFITPPATWPNEDPTTVSNGYASAEETQNKSLFSPTSVLHSCSLSEEAESITGKDDDYSCVSESSKAKAESLFPIPSELKFEFQDCLAAPEMFGEFDSAAAAESVLFSDDDWPGVFLTACEDLGLKSWHTDRNHEFFQDIDDLFVSDPLLAL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00257 316 CDD AP2 109 166 IPR001471 GO:0003700|GO:0006355
Phco4g00257 316 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Phco4g00257 316 MobiDBLite consensus disorder prediction 1 31 - -
Phco4g00257 316 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Phco4g00257 316 SUPERFAMILY DNA-binding domain 110 166 IPR016177 GO:0003677
Phco4g00257 316 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Phco4g00257 316 FunFam Ethylene-responsive transcription factor 2 109 168 - -
Phco4g00257 316 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Phco4g00257 316 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Phco4g00257 316 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Phco4g00257 316 MobiDBLite consensus disorder prediction 1 25 - -
Phco4g00257 316 MobiDBLite consensus disorder prediction 40 59 - -
Phco4g00257 316 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00257 Phco-Chr4 1630015 1630965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco4g00257 AP2 2.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00257 4 1630015 1630965 Phco4g00257 4 1630015 1630965 ECH
Phco4g00257 4 1630015 1630965 Phco4g03363 4 54061803 54062729 PCT