Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03329 ATGGACAAAACTCAATTGTTGTCCAAGATGGCTATGGGGGATGGACATGGTGAATCATCCCCATACTTTGATGGATGGAAGGCTCATGATGAAGATCCCTTTCACCCCACAGATAATCCTAACGGGGTTATCCAAATGGGTCTTGCTGAGAATCAGCTTACTTCTGATGTGGTTGAAGATTGGATACTGAACAACCCAGAGGCCTCCATTTGCACTCCAGAAGGAATAAATGATTTCAGGGCCATAGCTAACTTTCAGGATTATCATGGTCTAGCCGAGTTCAGAAATGCTGTGGCTAAATTCATGGGTAGAACAAGAGGAAACAGAATCAAGTTTGACCCTGACCGTATTGTCATGAGCGGTGGAGCCACTGGAGCACACGAAGTCACTGCCTTTTGTTTGGCAGATCCCGGTGAAGCATTTTTAGTGCCCATTCCCTATTATCCAGGTTTTGACCGGGATTTGAGGTGGAGAACGGGAGTTCAACTTGTTCCAGTTATGTGCGATAGCTCAAATAATTTCGTGCTGACAAAGGAAGCATTGGAAGATGCCTATGAGAAAGCTAGGGAGGATAACATCAGAGTAAAGGGTTTACTCATCACCAATCCATCAAATCCATTAGGCACGATCATGGACAGAAAAACACTGAGAACCGTGGTGAGCTTCATCAATGAGAAGCGTATCCACCTTGTATGTGATGAGATATATGCTGCAACAGTTTTCAGCCACCCCGGTTTCATAAGCATAGCTGAGATATTAGAGGAAGAAACAGACATAGAGTGTGACCGCAACCTCGTTCACATTGTTTATAGTCTTTCAAAGGACATGGGGTTCCCTGGCTTCAGAGTTGGCATCATATACTCTTACAATGATGCTGTGGTTAATTGTGCACGCAAAATGTCAAGCTTTGGATTGGTGTCAACACAGACTCAGTATCTTTTAGCATCAATGCTAAATGATGATGAGTTTGTGGAGAGGTTTCTGGCAGAGAGTGCAAAGAGGTTGTCACAAAGGTTCAGGGTTTTCACTGGGGGGTTGGCCAAAGTTGGCATAAAGTGCTTGCAAAGCAATGCTGGTCTCTTTGTGTGGATGGATTTAAGGCACCTTCTCAAAAAGCCAACTGTTGACTCTGAAATGGAGCTTTGGAAAGTGATCATTCATGAAGTTAAGATCAATGTTTCACCTGGCTCTTCTTTCCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCCATGCCAATATGGATGATATGGCTGTGCAAATTGCTTTGCAAAGAATCCGCACCTTTGTGCTTCAAAACAAGGAGGTGGTGGTACCTAACAAGAAACTTTGTTGGCACAGTAACTTGAGGCTGAGCCTCAAGACCAGAAGGTTTGATGATATCATGATGTCACCTCACTCTCCCTTACCACAGTCACCCATGGTTAAAGCCACAAATTGA 1440 0.4431 MDKTQLLSKMAMGDGHGESSPYFDGWKAHDEDPFHPTDNPNGVIQMGLAENQLTSDVVEDWILNNPEASICTPEGINDFRAIANFQDYHGLAEFRNAVAKFMGRTRGNRIKFDPDRIVMSGGATGAHEVTAFCLADPGEAFLVPIPYYPGFDRDLRWRTGVQLVPVMCDSSNNFVLTKEALEDAYEKAREDNIRVKGLLITNPSNPLGTIMDRKTLRTVVSFINEKRIHLVCDEIYAATVFSHPGFISIAEILEEETDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLLASMLNDDEFVERFLAESAKRLSQRFRVFTGGLAKVGIKCLQSNAGLFVWMDLRHLLKKPTVDSEMELWKVIIHEVKINVSPGSSFHCTEPGWFRVCHANMDDMAVQIALQRIRTFVLQNKEVVVPNKKLCWHSNLRLSLKTRRFDDIMMSPHSPLPQSPMVKATN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03329 479 Coils Coil 178 198 - -
Phco4g03329 479 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 7 430 - -
Phco4g03329 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 265 289 - -
Phco4g03329 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 46 72 - -
Phco4g03329 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 79 95 - -
Phco4g03329 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 138 159 - -
Phco4g03329 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 228 251 - -
Phco4g03329 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 192 216 - -
Phco4g03329 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 116 136 - -
Phco4g03329 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 297 320 - -
Phco4g03329 479 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 271 284 IPR004838 GO:0003824|GO:0009058|GO:0030170
Phco4g03329 479 Gene3D Aspartate Aminotransferase, domain 1 32 425 IPR015422 GO:0003824
Phco4g03329 479 Gene3D - 66 320 IPR015421 GO:0003824
Phco4g03329 479 CDD AAT_like 84 427 - -
Phco4g03329 479 SUPERFAMILY PLP-dependent transferases 17 430 IPR015424 -
Phco4g03329 479 Pfam Aminotransferase class I and II 44 426 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03329 Phco-Chr4 53808124 53810328 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00286 4 1825627 1828435 Phco4g03329 4 53808124 53810328 PCT