Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00286 ATGATGAACGACAACCAACCTCAGTTACTCTCTAAGATTGCCACCGGCAATGGCCATGGTGAGAACTCCCCTTACTTTGATGGGTGGAAGGCCTATGAAGATGATCCCTTTCATCCCATCAATAATCCTAACGGGGTTATCCAAATGGGTCTTGCAGAAAATCAGCTTGCTTCGGACTTGGTTCAGCATTGGTTAGCGAATAATCCAGGGGCTTCCATTTGCACACAAGAAGGAGTGCGTGCTTTCAAGGCCATTGCTAACTTTCAAGATTATCATGGTCTGCCGGAGTTCAGAAATGCAGTGGCTAAATTCATGGGAAGAACGAGAGGAAATAGAGTAACGTTCGACCCTGAGCGTATTGTTATGAGCAGTGGAGCAACAGGAGCACACGAGGTCACTGCGTTTTGTTTGGCAGACCCTGGCGATGCATTTTTGGTTCCCACACCCTATTATGCAGGTTTCGACAGGGATTTGAGGTGGAGAACGGGGGTTAAACTTGTTCCAGTTATATGCGAAAGCTCGAACGATTTCAAGTTGACAAGGAAAGCGTTGGAAGAGGCGTACGAGAAAGCCAAAGAGAAGAACATCAGAATAAAGGGGTTACTAATTACCACTCCATCAAACCCATTGGGAACTGTCATGGACCGACAAACTCTAAGAACAGTGCTGGGTTTTATCAACGAAAAACACATCCACCTAATAAGCGACGAAATATACGCAGGTACAGTTTTTTGCTACCCTGGATTCACGAGCATCGCGGAGGTAGTAGAGGAAGACAAGGACATAGAATGTGACCGTGACCTTGTCCACATTGTTTATAGTCTTTCCAAGGACATGGGGTTCCCTGGTTTCAGAGTTGGCATCATATACTCTTACAACGACGCAGTCGTCAGTTGCGCTCGCAAAATGTCTAGCTTTGGGTTAGTGTCCACGCAGACACAACATCTCATTGCATCAATGCTTTCTGATGATGAGTTTGTGAAAGGGTTTCTCGAAGAGAGTGCAAAAAGGCTTGCGCAAAGGTATGGGGTTCTTTGTAGGGGTCTTGGGCAAGTTGGCATAAAGTGCTTGGCGAGCAATGGTGGACTCTTTCTGTGGATGGATTTGCGTGGTCTTTTGAAGAAGGCAACGTTTGAGGCCGAAATGGAACTGTGGAGAGTGATCATTCAGCAAGTCAAGATCAATATTTCCCCTGGCTCTTCCTTTCACTGCTCTGAGCCAGGGTGGTTCAGGGTGTGCTATGCCAACATGGATGCTAGAGCCGTGGAGGTTTCTCTGGCGAGAATGCGCATCTTCGTGCATCAGAACACCGAAGCCAAGAAGAAATCTTGCAGCTATAGAAAGTTGAGGCTAAGCTTCTCATCCAGAAGGTTGGATGAGTTTTTGGTGTCACCTCACTCACCTTTTGCTCAGTCACCTCTAGTTAAAGCCTACACTTGA 1440 0.4667 MMNDNQPQLLSKIATGNGHGENSPYFDGWKAYEDDPFHPINNPNGVIQMGLAENQLASDLVQHWLANNPGASICTQEGVRAFKAIANFQDYHGLPEFRNAVAKFMGRTRGNRVTFDPERIVMSSGATGAHEVTAFCLADPGDAFLVPTPYYAGFDRDLRWRTGVKLVPVICESSNDFKLTRKALEEAYEKAKEKNIRIKGLLITTPSNPLGTVMDRQTLRTVLGFINEKHIHLISDEIYAGTVFCYPGFTSIAEVVEEDKDIECDRDLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVSCARKMSSFGLVSTQTQHLIASMLSDDEFVKGFLEESAKRLAQRYGVLCRGLGQVGIKCLASNGGLFLWMDLRGLLKKATFEAEMELWRVIIQQVKINISPGSSFHCSEPGWFRVCYANMDARAVEVSLARMRIFVHQNTEAKKKSCSYRKLRLSFSSRRLDEFLVSPHSPFAQSPLVKAYT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00286 479 Pfam Aminotransferase class I and II 47 425 IPR004839 GO:0009058|GO:0030170
Phco4g00286 479 SUPERFAMILY PLP-dependent transferases 19 432 IPR015424 -
Phco4g00286 479 CDD AAT_like 87 430 - -
Phco4g00286 479 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 10 431 - -
Phco4g00286 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 268 292 - -
Phco4g00286 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 141 162 - -
Phco4g00286 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 300 323 - -
Phco4g00286 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 82 98 - -
Phco4g00286 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 119 139 - -
Phco4g00286 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 49 75 - -
Phco4g00286 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 195 219 - -
Phco4g00286 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 231 254 - -
Phco4g00286 479 Coils Coil 174 201 - -
Phco4g00286 479 Gene3D - 69 323 IPR015421 GO:0003824
Phco4g00286 479 Gene3D Aspartate Aminotransferase, domain 1 35 428 IPR015422 GO:0003824
Phco4g00286 479 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 274 287 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00286 Phco-Chr4 1825627 1828435 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00286 4 1825627 1828435 Phco4g00286 4 1825627 1828435 ECH
Phco4g00286 4 1825627 1828435 Phco4g03329 4 53808124 53810328 PCT