Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03291 ATGCACCTTAAATTGGTGAAGAACTTGGAGCATTCGATAAATAAGAGAAGTGTAAGACACTCTCCATTTTTAACAGGTTCCAGACAAATAGCAAGGTTCATCATTCGGTTTAAGACACATCAACAAAATCCAAATTCTCGAGTCACAGTGGCGGTGGGTGTAGGAATGGGAAACCGACGCTTCACTCGGGTCGCAATCAGCGACGAGGAGGACGAAGCGCCTCCGCCTCCGCCTCCGAAGCAGCAATCCACGGCCAGTGTCTCCGACGAGAATCGGTCGAAGCAGCAGCGCAAGAGGAAGAGGATGAAGCTCCAGGAAGAAGAGGAGGAAGAGGAGGAAGTGGAGAAAGAGAGCGAGAAGGAGAAAGAGGAAGACAAGAAGAAGAAGAGAAAGATCAGAGACAAGCAGGACGGCGAAGAAGAGGAACCGCCGCAGGAAGACGCCAAGCCCATGGGCGAACCGGTTAGGGTTTCCGGAAAGGGGAGAGGCCGGAAAAAACATTTCGATTCCTTCGAGTACGACGGAAACCAATACACGCTGGAAGATCCTATACTTCTCACACCCGAGGACAAAGACCAAAAACCGTATGTGGCGATTATTAAGGACATTACGCAATCCCTAAATGGCAGCATGATGGTCACAGGCCAGTGGTTCTATCGACCTGAAGAGGCTGAAAGAAAAGGTGGTGGCAGCTGGCAATCACGTGATACAAGGGAGCTGTTTTATAGTTTTCACCGCGATGATGTACCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCAAATCGTAAGCAGCATCCTGGGTTTATTGTGCAAAAGGTGTATGACACAGTAGAAAGGAAACTCTGGAAGCTAACTGATAAAGACTATGAGGACAATAAACAGCAAGAAATTGATGAACTTGTTCAGAAAACCCTTCAACGTTTGGGTGAACTACTTGATATTGAGCCTGAAGAACCTGTTGCTGAACAGGAAGATCTGATGAAAAATAAGAGAATCTTAAGGAAAAAGAGCATTTCACCACTTGATGTTTCCAAAGAGGACGAAACATCTCGTAAGAGTGACCAATCTTTGAAACCTGAAACACCGGGGAGTTGTGCAAATAATGCTTCAGAACATTATCGTATATTAGTGGATTTTAATGCTCTAACTGGAGATACCCACCGTGACAAATGTTTGGAGAAGTTGCTTCAAAGTGTTCAATTCATGTTTAACTCTGATGACAGCATAAAGAAGGAAGACAAAGTAAATGACAATTCTGATGCAATCAACAATGGAAACAATGAAAAAAGTTCAGAAGTAGCAAATGAATGTAAAGACCAGGCTCAACAGAGTTCCAAGTCTTTTGTCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTCTAGAAAAAGCATCACATGATACCTTTTCATCAGATTATCAGAAGTATAATCAAAAGCTACGGCAATTAGTTTTTAATCTCAAGAACAATGCAATCCTAGCACGTCGTCTATTAAATGGAGAGTTGGAACCTTCTAAAATATTGAATATGACTCCCAATGAATTGAAGGAGGGTTTGACTGCTGAGGAAACAAACAAGAAAGAGCCTGATGAGTCACAACAAATGCAGATGACGGGTGCTCGATGCCGAAGATGCAGTGAGTGTAAGGTGGGCTTGAGGGATATAATCCACGCAGGACATGGTGATCGATATCAGCTGGAATGTATTGCCTGTGGTCATTCCTGGTTTGCCTCCCGTGATGAAGTGTCTGACCTGACTATAGATGCATCAGATTCAAAAAGAAGTGTAGGTACAGCGCCATGGGCCACTGCTAAATTTGAAGATGTTGAGAAGAAGCTGGTCAGTCCCCGTGAATCTGAAAAGAATGACATATTTAAGAAAACAAGTGAAGCATATATGCCAGTTTTTGATGCCCAGAAATCGTTTGGCAAGTCTAGGAAAGATGAAAACGGCCAAGCTTCAAAACAGGTTGACTAG 2007 0.438 MHLKLVKNLEHSINKRSVRHSPFLTGSRQIARFIIRFKTHQQNPNSRVTVAVGVGMGNRRFTRVAISDEEDEAPPPPPPKQQSTASVSDENRSKQQRKRKRMKLQEEEEEEEEVEKESEKEKEEDKKKKRKIRDKQDGEEEEPPQEDAKPMGEPVRVSGKGRGRKKHFDSFEYDGNQYTLEDPILLTPEDKDQKPYVAIIKDITQSLNGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGELLDIEPEEPVAEQEDLMKNKRILRKKSISPLDVSKEDETSRKSDQSLKPETPGSCANNASEHYRILVDFNALTGDTHRDKCLEKLLQSVQFMFNSDDSIKKEDKVNDNSDAINNGNNEKSSEVANECKDQAQQSSKSFVWPDVAVPAVVALEKASHDTFSSDYQKYNQKLRQLVFNLKNNAILARRLLNGELEPSKILNMTPNELKEGLTAEETNKKEPDESQQMQMTGARCRRCSECKVGLRDIIHAGHGDRYQLECIACGHSWFASRDEVSDLTIDASDSKRSVGTAPWATAKFEDVEKKLVSPRESEKNDIFKKTSEAYMPVFDAQKSFGKSRKDENGQASKQVD 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03291 668 ProSiteProfiles BAH domain profile. 176 295 IPR001025 GO:0003682
Phco4g03291 668 MobiDBLite consensus disorder prediction 351 365 - -
Phco4g03291 668 Gene3D - 141 312 IPR043151 -
Phco4g03291 668 SMART BAH_4 176 295 IPR001025 GO:0003682
Phco4g03291 668 MobiDBLite consensus disorder prediction 351 377 - -
Phco4g03291 668 SUPERFAMILY Elongation factor TFIIS domain 2 392 526 IPR036575 GO:0006351
Phco4g03291 668 MobiDBLite consensus disorder prediction 119 139 - -
Phco4g03291 668 SMART mid_6 430 535 IPR003618 GO:0006351
Phco4g03291 668 MobiDBLite consensus disorder prediction 91 107 - -
Phco4g03291 668 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 56 662 - -
Phco4g03291 668 Pfam BAH domain 177 293 IPR001025 GO:0003682
Phco4g03291 668 Pfam Transcription factor S-II (TFIIS), central domain 393 544 IPR003618 GO:0006351
Phco4g03291 668 MobiDBLite consensus disorder prediction 651 668 - -
Phco4g03291 668 CDD BAH_plant_3 158 304 - -
Phco4g03291 668 Coils Coil 90 142 - -
Phco4g03291 668 Gene3D - 377 527 IPR036575 GO:0006351
Phco4g03291 668 MobiDBLite consensus disorder prediction 422 441 - -
Phco4g03291 668 ProSiteProfiles TFIIS central domain profile. 397 553 IPR003618 GO:0006351
Phco4g03291 668 MobiDBLite consensus disorder prediction 649 668 - -
Phco4g03291 668 MobiDBLite consensus disorder prediction 67 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03291 Phco-Chr4 53433219 53440699 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03291 4 53433219 53440699 Phco4g03291 4 53433219 53440699 ECH
Phco4g00311 4 1964850 1970541 Phco4g03291 4 53433219 53440699 PCT