Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00311 ATGGTGAATCGTCCTCGCTTGACTCGGGTGGCGACCAGCGATGACGAAGACGAAGCGCTGCGCCCACAACGCACGCGGAAGAGGATGAGGCTTCTGGAGGAAGACAACGATGACGACAATGAAGAAGAAGGAAAAGAAGAGGTGCCGGAACCGCCTCAACCTGCGGAGGACGCTAAGCCTATTGGCGACCCTGTTAGGGTTTCGGGAAAAGGAAGAGGTAGGAAAAGGCACTATGACTCCTTCGAGTTCGATGGCATCCATTATACTCTCGAGGACCCTGTTCTTCTCGTACCCGAGGAGAAAGGCCAAAAGCCATATGTAGCCATTATTAAGGACATTACACAGTCTATCAACGGCAACGTGAAAGTAACGGGACAATGGTTTTATCGCCCAGAAGAAGCTGAGAAAAAAGGTGGTGGAAACTGGCAATCGTGTGATACGAGGGAGCTGTTTTATAGTTTTCATCGTGATGATGTTCCTGCCGAGGCTGTAATGCATAAGTGTGTGGTGCATTTTGTTCCTAGACACAAACAGCTTCCAAAACGTAAGGATCACCCTGGGTTTATTGTACAGAAGGTGTATGACACTGTGGAAAGAAAACTCTGGAGGCTGAGTGATAAGGACTATGAGGATATTAAGCAGCAAGAAATTGATGTTCTTGTTCAAAAGACTCTGGAACGTATTGGTGAACTTCTTGACATTGAGCTTAAGGAAGCCCCTGATGATGACGAGGACCAGATGAAACACAGAAGAAGCTTAAGCTTGAGGAGAAAGAGTGTTTCACCTCCCAATGTTTCAAAGGAAGAGGAGGAAACACTCAAGAGCGAACAACATCCAAAGTCAGAAACACCAGTGACTTATGTAACTAATGCCTCAGAGTATTATGGCATATTGGTAGAATTCAACGCGCTAACTGGAGATAGCCATCGTGACAAATGGTTGGAGAGGTTGCTTCAACGCATTCAGTACATGTGTGATTCTAATGATAGCAAAGAAAGGGACAAAGGATTGGGAAATGTCAATTCTGATGAAATCAACGGTGGAAGCAAGCATATAAGTTCAGAATCAGTAAATGACTGTCAAGATAAGGTTCAGAAGAGTTCCAAGTCTTTTATCTGGCCAGATGCTGCTGTATCAGCCATAGTTCCTCTCGAAAAAGCTTCACATGAGGCTCTCTCATCAGATTCTATGAAGTACAACCAAAAGTTGCGGCAATTGGCTTTTAATCTCCAGAAAAATGCAGTGTTAGCATGCCGTCTGTTAAGCGGAGAATTGGAACCTTCAAAACTATTAAATATGACACCCAATGAATTGAAGGAGGGTTTGGTTGCTGACAAAAGAACCAAGGAGAAGCCTGACGAGACCCAACATTTGCAGATGACAGATGGCCGCTGCTCAAAATGCATGGAATTTAAGGTGGGTTTGAGAGAGATTATCCATGCTGGAAATAATGAACGATATCAGTTGGAATGCGTTTCCTGCGGTCATTCCTGGTATGCCTCACGAGATGAGGTGTCTATGCCTATCATAGATTCATCTGATTCAAAAAGAAACATAGGCACAGCGCCGTAG 1572 0.4472 MVNRPRLTRVATSDDEDEALRPQRTRKRMRLLEEDNDDDNEEEGKEEVPEPPQPAEDAKPIGDPVRVSGKGRGRKRHYDSFEFDGIHYTLEDPVLLVPEEKGQKPYVAIIKDITQSINGNVKVTGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAEAVMHKCVVHFVPRHKQLPKRKDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQQEIDVLVQKTLERIGELLDIELKEAPDDDEDQMKHRRSLSLRRKSVSPPNVSKEEEETLKSEQHPKSETPVTYVTNASEYYGILVEFNALTGDSHRDKWLERLLQRIQYMCDSNDSKERDKGLGNVNSDEINGGSKHISSESVNDCQDKVQKSSKSFIWPDAAVSAIVPLEKASHEALSSDSMKYNQKLRQLAFNLQKNAVLACRLLSGELEPSKLLNMTPNELKEGLVADKRTKEKPDETQHLQMTDGRCSKCMEFKVGLREIIHAGNNERYQLECVSCGHSWYASRDEVSMPIIDSSDSKRNIGTAP 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00311 523 SMART mid_6 343 448 IPR003618 GO:0006351
Phco4g00311 523 MobiDBLite consensus disorder prediction 262 278 - -
Phco4g00311 523 MobiDBLite consensus disorder prediction 1 74 - -
Phco4g00311 523 Gene3D - 339 440 IPR036575 GO:0006351
Phco4g00311 523 SMART BAH_4 86 205 IPR001025 GO:0003682
Phco4g00311 523 Pfam BAH domain 87 201 IPR001025 GO:0003682
Phco4g00311 523 ProSiteProfiles TFIIS central domain profile. 309 466 IPR003618 GO:0006351
Phco4g00311 523 Gene3D - 70 297 IPR043151 -
Phco4g00311 523 CDD BAH_plant_3 68 214 - -
Phco4g00311 523 Pfam Transcription factor S-II (TFIIS), central domain 305 456 IPR003618 GO:0006351
Phco4g00311 523 MobiDBLite consensus disorder prediction 342 357 - -
Phco4g00311 523 MobiDBLite consensus disorder prediction 9 34 - -
Phco4g00311 523 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 523 - -
Phco4g00311 523 MobiDBLite consensus disorder prediction 241 285 - -
Phco4g00311 523 SUPERFAMILY Elongation factor TFIIS domain 2 304 439 IPR036575 GO:0006351
Phco4g00311 523 MobiDBLite consensus disorder prediction 329 357 - -
Phco4g00311 523 ProSiteProfiles BAH domain profile. 86 205 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00311 Phco-Chr4 1964850 1970541 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00311 4 1964850 1970541 Phco4g03291 4 53433219 53440699 PCT