Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03288 ATGGCAGTCCTGTGGCGAACTACCACCGCTTACACGCACCGCCACTTACCGCGACGCCACTTCGATGGGAAAACCAAAGCCTCTGCTCCCAACACTTTCTCATGCTCTAACTGGGATTCTACTAAGAAGCTTTCTCCCACGCAGAGGATTGTCCCACGTGGCGGTAGAGTGATTGTCGCTGCGAGCCCTCCCACTGAAGACGCTGTAGTTGCCACTGACCCACTTACCAAGCAGGATCTTGTTGATTATCTCGCCTCGGGTTGCAAGCCCAGGGAAAAATGGAGAATAGGTACTGAACACGAGAAGTTTGGTTTTGAGTTTGGAAGCTTGCGTCCTATGAAGTATGAGCAAATAGCAGAATTGCTGAATGGAATTGCCGAGAGATTTGACTGGGATAAAATAATGGAAGGTGATAAAATTATTGGACTCAAACAGGGGAAGCAGAGCATATCATTGGAGCCTGGTGGTCAGTTTGAACTTAGTGGAGCCCCTCTTGAAACCTTGCACCAGACTTGTGCTGAAGTTAATTCACACCTTTATCAGGTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGAATTGGTTTCCAGCCAAAGTGGGGAATTGAAGACATACCTGTAATGCCAAAGGGAAGATATGATATTATGAGGAATTACATGCCTAAAGTTGGTTCTCTGGGGCTTGACATGATGTTCAGGACATGCACTGTACAGGTCAATCTGGACTTTAGTTCAGAAGCAGACATGGTCAGGAAATTTCGTGCTGGCCTTGCCTTACAGCCTATAGCAACAGCTCTTTTTGCGAATTCACCTTTTAAAGAGGGAAAGCCGAATGGTTTTGTCAGTATGAGAAGCCATATTTGGACCGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTCTTTGATGATTCTTTTGGGTTTGAGCAGTATGTTGATTATGCTCTTGATGTTCCTATGTATTTTGTCTACCGGAAACATAGATATATCGATTGTACTGGAAAGACCTTCAGGGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGAGAAGGTTATGTGCATTACCAGCACTTTGGGTAGGGTTATTGTACGATGAAGCTTCTCTACAAAGTCTTTTGGATTTAACAGCTGATTGGACCCCAGAAGAAAGACAGATGTTACGGAATAAGGTTCCCGTAACTGGTCTGAAAACACCATTCCGAGATGGTTTGCTAAAGCATGTTGCTGAAGATGTTCTACAGTTGGCAAAGGATGGCTTGGAGAGAAGAGGCTTCAAGGAATCGGGATTTTTGAATGAGGTTGCCGAGGTGGTTAGAACAGGTGTCACTCCAGCTGAGAGGCTTTTGAAATTGTATCATGGAAAGTGGGAGCAATCCGTAGATCATGTCTTTGAGGAATTGCTTTATTAA 1527 0.4479 MAVLWRTTTAYTHRHLPRRHFDGKTKASAPNTFSCSNWDSTKKLSPTQRIVPRGGRVIVAASPPTEDAVVATDPLTKQDLVDYLASGCKPREKWRIGTEHEKFGFEFGSLRPMKYEQIAELLNGIAERFDWDKIMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGIEDIPVMPKGRYDIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMVRKFRAGLALQPIATALFANSPFKEGKPNGFVSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKHRYIDCTGKTFRDFLAGRLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPALWVGLLYDEASLQSLLDLTADWTPEERQMLRNKVPVTGLKTPFRDGLLKHVAEDVLQLAKDGLERRGFKESGFLNEVAEVVRTGVTPAERLLKLYHGKWEQSVDHVFEELLY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03288 508 SUPERFAMILY Glutamine synthetase/guanido kinase 86 506 IPR014746 GO:0003824
Phco4g03288 508 Pfam Glutamate-cysteine ligase family 2(GCS2) 126 411 IPR006336 GO:0004357|GO:0042398
Phco4g03288 508 PIRSF GCL 61 508 IPR035434 GO:0004357|GO:0006750
Phco4g03288 508 FunFam Glutamate--cysteine ligase 60 508 - -
Phco4g03288 508 Gene3D - 60 508 - -
Phco4g03288 508 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 51 508 IPR035434 GO:0004357|GO:0006750
Phco4g03288 508 NCBIfam glutamate--cysteine ligase 74 508 IPR011556 GO:0004357|GO:0006750
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03288 Phco-Chr4 53404657 53412680 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03288 4 53404657 53412680 Phco4g03288 4 53404657 53412680 ECH
Phco4g00314 4 1990483 1993780 Phco4g03288 4 53404657 53412680 PCT