Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03284 ATGAGGGGTTGGTCCTCCACGACGCCGTTTCCACCGACATCGCTTCCTTTTTTAAAACCGTTCATAACTCAAACCCCATTACACTCTGTTCAGTTTATACTAGTTAAAATAGTCTTTATGCTCCGTTCCTCTGAAGCAAGGGTTGAGTACCCTAAGAAGCAAGGGCTGAGTACCCCAAGAGGCAATGGCAGTCAGAGAAAGGACATCAGCCCTTTGTCCTTTTCCCCCTTTCCCCCTTTCCCCCCTGCATTCTTCTGTCAAAACCCTAGATATCAAATCTGGGGTTTTGTTTTCTTAGTGAGTTCAGACAGACAGGTAGCAAGTAAATGCATGGATGGGAGAGAGGTTATGGCATTTCCTGGTGGCTCAGCTTCATATTACATGCACAGAGGAGGGGTTGGAGGGTCTGGTTCTGGAACACTCAGTGGGGGAGGGGAGTTCCAAGCAGCCCCTGGGTTCAGACCTTTGTCAAACACTGGCATTCAAGGTGAGTCAAATTCAAGGGGTCAAGGGGGTGGTTCTGTAGGCTCTAGCTCCACATTTTCCGTGGATCCTCATCAGGGTCGTGCCAATTTTAACCATGGCATTGGCATTGGCATTGGCGGTGGGGGACCTTCAAGTGAGCCTGTGAAGAAGAAAAGAGGGAGACCCCGTAAATATGGTCCGGATGGAACAGTTTCTTTGAGATTGTCTCCAATGTCTGCCCCCGCTAACTCCACTCAGGGTGAAAGTGCAATCACCCTTTCTCAAAAAAAGGGAAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAACTAGCTGCTTTAGGTGAATGGATGAATAGTTCAGCAGGCTTGGCCTTTTCACCTCATGTTGTCACTATTGGAGTTGGGGAGGACATTGTGGCAAAGTTATTGTTATTATCGCAGCAGAGACCAAGGGCTCTTTGCGTTTTGTCAGGCACTGGGACAGTTTCTTCAGTCACTCTACGGCAGCCTGCTTCTACCAATGCCAGTGTAACTTTTGAGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCCTCTAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGTCCTGATGGTCATGTTATTGGCGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCAGTGCAGGTGGTTCTGTGCAGTTTTGTTTATGGTGGCTCGAAGACCAAGCCTAAACAAGGGCTCACCATCACAGAGGAAAGTTCTGAGCAGCCCCAGCACAATGACAAGATGGCTTCTCCAGCCAGTGCTCCACCTGGTCAAAATCAAAACTACCTCCATTCTGGCACACACATTTGGCCTGGATCTCAACCACCAGAGCTGAAAAGCACGCAAATCCATACTGGCATTGACTTGACTCGTGGGTTTGCACTATCACATGCTGAAACAAATGATTTATTCGTGATTAAGTGA 1452 0.4828 MRGWSSTTPFPPTSLPFLKPFITQTPLHSVQFILVKIVFMLRSSEARVEYPKKQGLSTPRGNGSQRKDISPLSFSPFPPFPPAFFCQNPRYQIWGFVFLVSSDRQVASKCMDGREVMAFPGGSASYYMHRGGVGGSGSGTLSGGGEFQAAPGFRPLSNTGIQGESNSRGQGGGSVGSSSTFSVDPHQGRANFNHGIGIGIGGGGPSSEPVKKKRGRPRKYGPDGTVSLRLSPMSAPANSTQGESAITLSQKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLLLSQQRPRALCVLSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVVLCSFVYGGSKTKPKQGLTITEESSEQPQHNDKMASPASAPPGQNQNYLHSGTHIWPGSQPPELKSTQIHTGIDLTRGFALSHAETNDLFVIK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03284 483 CDD DUF296 283 395 IPR005175 -
Phco4g03284 483 ProSiteProfiles PPC domain profile profile. 275 416 IPR005175 -
Phco4g03284 483 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 178 434 IPR039605 GO:0003680
Phco4g03284 483 MobiDBLite consensus disorder prediction 402 456 - -
Phco4g03284 483 Pfam Plants and Prokaryotes Conserved (PCC) domain 283 396 IPR005175 -
Phco4g03284 483 MobiDBLite consensus disorder prediction 231 248 - -
Phco4g03284 483 Gene3D - 283 417 - -
Phco4g03284 483 SUPERFAMILY AF0104/ALDC/Ptd012-like 280 403 - -
Phco4g03284 483 MobiDBLite consensus disorder prediction 404 456 - -
Phco4g03284 483 MobiDBLite consensus disorder prediction 138 263 - -
Phco4g03284 483 MobiDBLite consensus disorder prediction 158 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03284 Phco-Chr4 53376631 53383505 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03284 4 53376631 53383505 Phco4g03284 4 53376631 53383505 ECH
Phco4g00317 4 2023602 2026996 Phco4g03284 4 53376631 53383505 PCT