Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00317 ATGGATGGAAGAGAAGGTATGGGTTTTCCTGGCGGCTCTGCTCCATATTACATGCATCATAGAGGAGGGGTTAGTGGGTCTGGTCCAGGAACTGGAACGCCCTCTGGGTTCCAACCACCTTCTGTTTTCAGAGCTTTGTCAAATGTCTCTTCAGGTTCTTCATACTCAGTAGAGGCTAAGCCTCAGGCTCAGGCTCAGCCCCAGGCTCAGCCTCAGCCTCAGCGTGGTGGTTTTGGTCATGGCATTAACTTAGGTTCTTCACCTGACGGTGGAGGTGGAATGCCTTCTTCCGGTGAATCTGTGAAAAAGAAAAGAGGGAGGCCAAGGAAGTATGGTCCTGATAGTGGGACTGTTTCCCTGAGACTCTCTCCCTTGTCTGCCACTGCAAATTCCACCCCTGGAACAGGCAACTCCTCAGAGAAACGGCCCAGAGGACGTCCACCTGGAAGTGGAAGGAAGCAACAGCTTGCCACTTTAGGTGAATGGATGAACAATTCTGCAGGACTGGCCTTTTCACCTCATGTTATCACTGTTGGAGTTGGGGAGGACATTGTAGCAAAGTTATTCTCATTTTCACAGCAGAGGCCAAGGGCTTTGTGCATCTTAACTGGAACTGGAACAGTTTCTTCTGTCACTCTGCGCCAGCCAGCTTCTACTAGCATCAGTGTTTCTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCACGCAGTAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATATTATTGGTGGTGGTGTTGCCAGCCTTATCGCTGCAAGCCCGGTGCAGGTGGTAGTATGCAGTTTTGTATATGGAAGCTCTAAGCCAAAGACTAAACAAGTGACCAGTGCTACAAAAGATAGCAGTTGCGAGCCTCAGAGTAGTGACAAGTTAGCTTCTCCAGGCAGTGCTCCTAATCAAAACTACTCTTCTCCTGCCACAGGCATGTGGCCTGCTTCATCAAGGCCATTAGAGGTGAAAAGTGCACATCCACACACTGGTATTGACTTGACGCGTGGGTGA 1071 0.4939 MDGREGMGFPGGSAPYYMHHRGGVSGSGPGTGTPSGFQPPSVFRALSNVSSGSSYSVEAKPQAQAQPQAQPQPQRGGFGHGINLGSSPDGGGGMPSSGESVKKKRGRPRKYGPDSGTVSLRLSPLSATANSTPGTGNSSEKRPRGRPPGSGRKQQLATLGEWMNNSAGLAFSPHVITVGVGEDIVAKLFSFSQQRPRALCILTGTGTVSSVTLRQPASTSISVSYEGRFQILCLSGSYLVAEEGGPRSRTGGMSVSLSSPDGHIIGGGVASLIAASPVQVVVCSFVYGSSKPKTKQVTSATKDSSCEPQSSDKLASPGSAPNQNYSSPATGMWPASSRPLEVKSAHPHTGIDLTRG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00317 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 61 322 IPR039605 GO:0003680
Phco4g00317 356 MobiDBLite consensus disorder prediction 1 154 - -
Phco4g00317 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 173 286 IPR005175 -
Phco4g00317 356 MobiDBLite consensus disorder prediction 28 73 - -
Phco4g00317 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 171 288 - -
Phco4g00317 356 MobiDBLite consensus disorder prediction 294 356 - -
Phco4g00317 356 ProSiteProfiles PPC domain profile profile. 168 309 IPR005175 -
Phco4g00317 356 CDD DUF296 173 285 IPR005175 -
Phco4g00317 356 MobiDBLite consensus disorder prediction 119 139 - -
Phco4g00317 356 MobiDBLite consensus disorder prediction 294 333 - -
Phco4g00317 356 PRINTS AT-hook-like domain signature 139 150 IPR017956 GO:0003677
Phco4g00317 356 PRINTS AT-hook-like domain signature 102 112 IPR017956 GO:0003677
Phco4g00317 356 Gene3D - 173 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00317 Phco-Chr4 2023602 2026996 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00317 4 2023602 2026996 Phco4g03284 4 53376631 53383505 PCT