Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03254 ATGATGACTCCCTCAGTGCCCTTCTTCTTTCTAATTGCTCTATGCTTCACTTCTGCATATGCCGCAAGGTTTGACATCACAAACCGCTGCACATACACTGTGTGGGCTGCGGCTGTGCCTGGCGGCGGTAGGGTGCTAAACTCGGGCCAGTCATGGGCCTTGGACGTAGCCGCAGGAACCAAAGGGGCCCGCATTTGGGCCCGAACCGGATGCAACTTCGACGGTTCAGGCCGTGGTGGATGCAAGACCGGGGACTGTGGCGGTGTTCTTGAGTGCAACGCATACGGTACACCTCCCAACACCCTAGCGGAATACGCGCTGAACCAGTTCAACAATTTGGACTTCTTCGACATCTCCCTCGTAGACGGTTTCAACGTTCCGATGGAGTTTAGTCCGACGTCGAATGGATGCTCACGTGGCATAAGATGCACTGCTGACATCAAGGGACAGTGTCCCTCTGAGCTGAAGACTGAAGACGGTTGCAACAACCCATGCACTGTCTACAAAACCGATGAATACTGTTGCAATTCTGGAAGCTGTTCTCCAACTACTTTTTCCAAATTCTTCAAGGATAAGTGCCCCGATGCTTATAGTTATCCCAAAGATGATCAAACCAGCACCTTCACATGCAACGGTGGAACTAACTACAAGGTTGTCTTTTGCCCTTGA 669 0.5157 MMTPSVPFFFLIALCFTSAYAARFDITNRCTYTVWAAAVPGGGRVLNSGQSWALDVAAGTKGARIWARTGCNFDGSGRGGCKTGDCGGVLECNAYGTPPNTLAEYALNQFNNLDFFDISLVDGFNVPMEFSPTSNGCSRGIRCTADIKGQCPSELKTEDGCNNPCTVYKTDEYCCNSGSCSPTTFSKFFKDKCPDAYSYPKDDQTSTFTCNGGTNYKVVFCP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03254 222 Gene3D Thaumatin 22 222 IPR037176 -
Phco4g03254 222 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Phco4g03254 222 PRINTS Pathogenesis-related protein signature 212 221 IPR001938 -
Phco4g03254 222 PRINTS Pathogenesis-related protein signature 42 51 IPR001938 -
Phco4g03254 222 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Phco4g03254 222 PRINTS Pathogenesis-related protein signature 114 130 IPR001938 -
Phco4g03254 222 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Phco4g03254 222 PIRSF PR5 1 222 IPR001938 -
Phco4g03254 222 ProSiteProfiles Thaumatin family profile. 21 222 IPR001938 -
Phco4g03254 222 ProSitePatterns Thaumatin family signature. 77 92 IPR017949 -
Phco4g03254 222 FunFam Thaumatin I 22 222 - -
Phco4g03254 222 Pfam Thaumatin family 28 222 IPR001938 -
Phco4g03254 222 PANTHER OS03G0233200 PROTEIN 11 222 IPR001938 -
Phco4g03254 222 SUPERFAMILY Osmotin, thaumatin-like protein 22 222 IPR037176 -
Phco4g03254 222 SMART tha2 24 222 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03254 Phco-Chr4 53192891 53193559 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03254 4 53192891 53193559 Phco4g03254 4 53192891 53193559 ECH
Phco4g00338 4 2170677 2171414 Phco4g03254 4 53192891 53193559 PCT