Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00338 ATGGCTCACTCACTCTCCCTAACACCACTTTGCTCCCTCCTCATGCTCGCCTCATTATCTCTCGCCACCGCTGCAAACTTCGAGATCGTCAACAACTGCCCCTACACGGTGTGGGCGGCTGCCAGCCCCGGCGGCGGGCGGCGCCTGGACCGCGGGCAGACGTGGAACCTGTGGGTGAACGCGGGCACTGCCATGGCCCGCATATGGGGTCGCACCGGGTGCAACTTCGACGGCAGTGGGCGCGGGCGGTGCCAGACAGGTGACTGCACCGGCGGCCTGAACTGCCAGGGCTGGGGCGTTCCTCCCAACACCCTGGCGGAGTTCGCCCTGAACCAATACGGCAACATGGACTTCTACGACATCTCACTGGTGGACGGTTTCAACATCCCGATGGACTTCTACCCCGTGAACGGAGGGTGTCACAAAATCAGTTGCACCGCGAACATTAATGGGCAGTGCCCTGGGCCATTAAGGGTCGAAGGCGGATGCAACAACCCCTGCACTGTGTTTAAGACGAACGAGTATTGCTGCACCAATGGGCAAGGGAGCTGTGGACCCACTACGTACTCTAGGTTCTTCAAGGAGAGGTGCCGTGATGCTTATAGTTACCCTCAGGATGACCCTACCAGCACCTTCACTTGCCCTGCTGGCTCTAACTACAAGGTTCTCTTCTGTCCTCTCGGAGATCCTCTTCTTCCTCTTCACATGCTTCCTAATACCACCACCAATCAATATTGA 738 0.5827 MAHSLSLTPLCSLLMLASLSLATAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLWVNAGTAMARIWGRTGCNFDGSGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALNQYGNMDFYDISLVDGFNIPMDFYPVNGGCHKISCTANINGQCPGPLRVEGGCNNPCTVFKTNEYCCTNGQGSCGPTTYSRFFKERCRDAYSYPQDDPTSTFTCPAGSNYKVLFCPLGDPLLPLHMLPNTTTNQY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00338 245 FunFam Thaumatin I 25 226 - -
Phco4g00338 245 SUPERFAMILY Osmotin, thaumatin-like protein 26 226 IPR037176 -
Phco4g00338 245 PRINTS Pathogenesis-related protein signature 216 225 IPR001938 -
Phco4g00338 245 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Phco4g00338 245 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Phco4g00338 245 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Phco4g00338 245 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Phco4g00338 245 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Phco4g00338 245 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Phco4g00338 245 Gene3D Thaumatin 24 227 IPR037176 -
Phco4g00338 245 SMART tha2 27 226 IPR001938 -
Phco4g00338 245 PIRSF PR5 1 244 IPR001938 -
Phco4g00338 245 ProSiteProfiles Thaumatin family profile. 24 226 IPR001938 -
Phco4g00338 245 PANTHER OS03G0233200 PROTEIN 14 226 IPR001938 -
Phco4g00338 245 Pfam Thaumatin family 31 226 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00338 Phco-Chr4 2170677 2171414 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00338 4 2170677 2171414 Phco4g03254 4 53192891 53193559 PCT