Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03244 ATGCTAATCCTCAACCCTGCAACTTTCTGTTCCCTACTCTCAAATACGTATGTAACGTTTTCACAACTCATGTCTCCATCCGTAGGTGGATTTGCAGACACAAACGCAGCACAAATAAAAGGAGTGAAATTTTTCACATCAAAAAGCATTAGCACCGAGCTTATCTCTGCAGTGAGTCCCACTATACCAATGGGCGAGGAAGAGAAAAAACCAGAAGAAACCAAAGGGGAGGAGAAAAAAGCAGAGGAACCCAAGGAAGAGAAGAAACCGGAGCAAGACCAAAAAGCAGAGGAGTCAAAAGATGAAAAGGAATCCAAGGAGGAGGAATCTGCGCCGCCGCCAGAAATCGTGCTTAGAGTCTTCATGCATTGCGAGGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGGGTGGAAGATATTCTCACGGATTGCAAGTCTCACAAGGTGGTGGTGAAAGGCGAAAAGGCGGATCCGCTGAAGGTTCTGGAGAGAGTACAGAGGAAGAGCCATAGAAAGGTTGAACTTCTCTCTGCAATCCCAAAACCAGCGGCGGAAGAAGAGAAAAAGGCAGAGGAAGAGAAACCCAAACCTGAGGAGAAGAAAGAAGAGCCTCAGGTTATTACAGTTGTTTTGAGAGTACACATGCATTGCGAAGCTTGTGCCCAAGAAATCAAGAGACGCATAGAGAAAATGAAAGGGGTGGAATCAGTGGAAGCAGATCTGAAGAGTTCAGAGGTGAGCGTGAAGGGGGTGTTCGAGGCAGAGAAGTTGGTGGAGCACGTGTCGAAGAGGACAGGGAAGCATGCAGTGATAGTGAAGCAGGAAGCAGAGAAGAAGGAGGAGGAGGCAAAAGAAGAGAGCAAAGGGGAGGAAGGGGAGAAGAAGGAGAAAGAGAGTGGTGAAGGAGAGGAAAAGAAGGAGAAGAAAGGAGAGGCTGAAGGGAAAGCAGAAGAGGGAGGCACAGAAGAAAGCACAGTGGTGGAGGTGAAAAGGAGTGAGTACTATTACAACCCTCCAAGGTATGGAATGGAGTTCTATGCATACCCTGGACCAGCTTACCCTCCCCAGATCTTCAGTGATGAGAACCCCAATGCCTGTTGTGTGATGTAA 1122 0.4813 MLILNPATFCSLLSNTYVTFSQLMSPSVGGFADTNAAQIKGVKFFTSKSISTELISAVSPTIPMGEEEKKPEETKGEEKKAEEPKEEKKPEQDQKAEESKDEKESKEEESAPPPEIVLRVFMHCEGCARKVRRSLKGFPGVEDILTDCKSHKVVVKGEKADPLKVLERVQRKSHRKVELLSAIPKPAAEEEKKAEEEKPKPEEKKEEPQVITVVLRVHMHCEACAQEIKRRIEKMKGVESVEADLKSSEVSVKGVFEAEKLVEHVSKRTGKHAVIVKQEAEKKEEEAKEESKGEEGEKKEKESGEGEEKKEKKGEAEGKAEEGGTEESTVVEVKRSEYYYNPPRYGMEFYAYPGPAYPPQIFSDENPNACCVM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03244 373 ProSiteProfiles Heavy-metal-associated domain profile. 210 274 IPR006121 GO:0046872
Phco4g03244 373 Coils Coil 89 109 - -
Phco4g03244 373 MobiDBLite consensus disorder prediction 65 113 - -
Phco4g03244 373 MobiDBLite consensus disorder prediction 276 333 - -
Phco4g03244 373 Gene3D - 207 276 - -
Phco4g03244 373 Gene3D - 113 185 - -
Phco4g03244 373 CDD HMA 122 178 IPR006121 GO:0046872
Phco4g03244 373 CDD HMA 214 273 IPR006121 GO:0046872
Phco4g03244 373 MobiDBLite consensus disorder prediction 184 207 - -
Phco4g03244 373 SUPERFAMILY HMA, heavy metal-associated domain 208 278 IPR036163 GO:0046872
Phco4g03244 373 SUPERFAMILY HMA, heavy metal-associated domain 118 172 IPR036163 GO:0046872
Phco4g03244 373 MobiDBLite consensus disorder prediction 276 334 - -
Phco4g03244 373 MobiDBLite consensus disorder prediction 57 114 - -
Phco4g03244 373 Coils Coil 277 297 - -
Phco4g03244 373 ProSiteProfiles Heavy-metal-associated domain profile. 113 177 IPR006121 GO:0046872
Phco4g03244 373 Pfam Heavy-metal-associated domain 117 172 IPR006121 GO:0046872
Phco4g03244 373 Pfam Heavy-metal-associated domain 214 272 IPR006121 GO:0046872
Phco4g03244 373 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 99 373 IPR044577 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03244 Phco-Chr4 53112834 53116926 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03244 4 53112834 53116926 Phco4g03244 4 53112834 53116926 ECH
Phco4g03244 4 53112834 53116926 Phco7g01944 7 31009803 31011508 PCT