Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03198 ATGGAACACCACCAAAACGGCGTCGTCAATAGCCGGCAAGAACACGAAGAAGCATTGCTGGCTCTCGTCGAACACCGTACCCGTGAAGTCAAACACTTCCGTTATTATATCTCTTATTACACCTCCCAGCTTGAGGAAGCAGAAAAGAGGTTGTTAGAATCTAAAACCAAGTTGGCTCTTTTACGAGGTCTAACTAGTGCAAGTTCATCACACGTTGACGCTGAACAAGTGAAGATAGAACGTGAATCAAAAATTGGTTCCTTTCATAAAAGTGACGGTTCTTCCAAAAACCACCTTCAGTCTAGGTTACGCCTTGCTCGTGTGGGTTCAAAATCTTCGCAATCCGTACCGTTGCCACCTTCTTCTCTTGCTAGGGTAAGGGTAAAGTCTGAAAAGACTCAGACTCAGAGTATATCTACTGAACGGGAAAACATTGAAGTCCAAGGCAGAGGGAGCAAAAGGAAGTTTTTTGAACAGAAAGAGGCTGAGGAAGTGATTCCCTTGATATGTAAGAATTCTTCACCAGAATCAGTGCTTTTTCAAACAAGCAATTATCACTGCTCAAGTCAACACAAGAGGAGATTGCGATGCATTGCTGTGTGTCCTGTAAATGATCGCCAGTTTGTGACCAGTGCTTTGGATGGAGTGGTCAACTTGTGGGAAGTTTTTTCATCACAATCAGGAGCATATCTTCTTACAAGTACAAATTGTATATCCCCACTGCAGAGATGGCCAGAAGACATAGTTTGGCACCCAAACGGAAACAGCTTGCTTTCGGTATATAGTGCTGATGATCTAGACTCTCAAATATCAGTTACGGACTTCAGTAGAGTAAAAGGTGATGGGAGATCAAATTATGTCAATTTCTTAGAGGACAAACCTCACATGAAGGGTGTTATAAATAGCATTGCTTTTCTGCCTGGGGAGAATACCAGTTTTGTAACCGGAGGAACCGACCATGCTGTCGTACTGTGGCGTGAGAATGGTCATAACAAATGGAAGCCAGAAGCATTGCACAGGAATCTTCATTCTTCAGCCGTCATGGGAGTATCTGGTATGCAGCAGAGGCACCTTGTGTTGTCTGTCGGCAAAGACAAGAGAATTTTGGGGTACGATGCTCATGTAGGAAGAACAGATTTCATGCAGCAAGTTGATAGTAAATGTTTGAGTGTTCTGCCAAATCCGTGTGACTTCAATTTATTCATGGTTCAAACGGGAACTCCTGAGAGGCAGCTTCGATTGTTTGATATTAGATCAAAACGGACAGAACTTCATGCCTTTGGATGGAAGCAAGAAAGCAGTGAGTCTCAGTCAGCTCTGATAAATCAGGCTTGGTCCCCAAATGGAGTGTACATCACATCTGGTTCAGCTGATCCCATGTTTCACATATTTGACATAAGATATAATGGTCGTAAACCTTCCCAATCCATAGATTCTCATCAGAAACGAGTCTTCAGAGTCATGTGGCTTCGCTCTCTTCCCTTGCTCATTTCCATATCATCTGATCTCAGACTCGGGTTACACGAAGTTCTGTAG 1536 0.4329 MEHHQNGVVNSRQEHEEALLALVEHRTREVKHFRYYISYYTSQLEEAEKRLLESKTKLALLRGLTSASSSHVDAEQVKIERESKIGSFHKSDGSSKNHLQSRLRLARVGSKSSQSVPLPPSSLARVRVKSEKTQTQSISTERENIEVQGRGSKRKFFEQKEAEEVIPLICKNSSPESVLFQTSNYHCSSQHKRRLRCIAVCPVNDRQFVTSALDGVVNLWEVFSSQSGAYLLTSTNCISPLQRWPEDIVWHPNGNSLLSVYSADDLDSQISVTDFSRVKGDGRSNYVNFLEDKPHMKGVINSIAFLPGENTSFVTGGTDHAVVLWRENGHNKWKPEALHRNLHSSAVMGVSGMQQRHLVLSVGKDKRILGYDAHVGRTDFMQQVDSKCLSVLPNPCDFNLFMVQTGTPERQLRLFDIRSKRTELHAFGWKQESSESQSALINQAWSPNGVYITSGSADPMFHIFDIRYNGRKPSQSIDSHQKRVFRVMWLRSLPLLISISSDLRLGLHEVL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03198 511 Gene3D - 382 510 IPR015943 GO:0005515
Phco4g03198 511 Pfam WD domain, G-beta repeat 442 465 IPR001680 GO:0005515
Phco4g03198 511 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 8 510 - -
Phco4g03198 511 SUPERFAMILY WD40 repeat-like 193 502 IPR036322 GO:0005515
Phco4g03198 511 Gene3D - 121 377 IPR015943 GO:0005515
Phco4g03198 511 SMART WD40_4 428 465 IPR001680 GO:0005515
Phco4g03198 511 SMART WD40_4 182 221 IPR001680 GO:0005515
Phco4g03198 511 SMART WD40_4 470 509 IPR001680 GO:0005515
Phco4g03198 511 SMART WD40_4 283 326 IPR001680 GO:0005515
Phco4g03198 511 SMART WD40_4 332 372 IPR001680 GO:0005515
Phco4g03198 511 Coils Coil 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03198 Phco-Chr4 52693798 52697023 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03198 4 52693798 52697023 Phco7g01893 7 22483447 22488345 PCT