Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03180 ATGGGAGGAGCTTCTGCAGATCTTCACCAACATGAATCAGACATAGAACTAAGTCATGCTGAAAGGACTGACACCAACTTAGGGGCTTCAGAGTCAAAAGCTGCCACTGATGTTGGACTTGACAGTGGCATCAAATCTCAGGCTGAGGCTGAAGGACACTATGTTGAGGTCACCATGGACATTCATGGTGATTCTGTGGCCTTGCACAGTGTTAAAGCTTTTGGGGGTGTTGATGTGGTGGAAGAGGAGGGTGAGAAGTTGGGTTTGACAGGGAAGAGGTTTGAGAAGAAACGATCCTTCAGTGCCTCTATGGTTCAGAGTGCTGCTATCCGCATGAAGCAGCTAAAGCGTTTGGCTTCTTTCTCCAAACCAGCTCCTAAACACTTTGAAAGAACAAAGTCTGCAGTGGCTCATGCTCTCACAGGGCTCAAGTTTATCAGCACGACCGATGGGGGTGAAGGATGGATTAAGGCGGAGGAGCGGTTTAAGAACCTAGCTGGTGCTGATGGCTATCTTCCTCGTGCTCTCTTTGCACAATGCTTAGGATTGAACAAGGAGTCCGAGGCTTATGCAGAGAAGCTTTTTGATACTCTTGCTAGACAGAGAGGTATTCAAGGCGGGTCCATTAACCATATCCAGTTTAAGGAGTTCTGGGACAATATTTCTGACCAGAGCTTTGATGCTAGGCTCAAAACATTCTTTGACATGGTTGATAAAGATGCAGATGGAAGAATCACTGAGGAAGAAATTAAAGAGATTATCTGCCTTAGCGCCACTGCCAACAAACTGTCAATCATTCAGAAGCAAGCAGAGGAATATGCAGCTTTAATCATGGAAGAACTGGATCCTGATGACTCTGGATACATCATGATAGACAGCCTGGAGACACTTTTGTTGCATGGACCAGAGGAAACTACAAGAGGAGAAAGCAAGAACCTAAGTCAAATGCTAAGCCAAAAGCTTAAGCCTACATACTTGGACAGTACAATTATGAGGTGGTATAGGGATGCAAGGTACTTTTTGCTGGACAATTGGCGAAGATCTTGGGTACTTGCCCTGTGGATTGGTGTGATGTTAGGCCTATTTGCCTATAAATTTGTGCAATATAGGAGAAAAGCTGCCTATGAGGTAATGGGCCATTGTGTATGCATGGCAAAAGGTGCAGCAGAGACACTTAAATTGAACATGGCTCTCATCTTACTACCTGTTTGCCGAAACACCATCACCTGGCTCAGGAATAAGACCAAACTAGGTGCTGTAGTTCCTTTTGACGACAACATCAACTTCCACATGGTAATAGCTGTGGCAATAGCAATTGGTGTTGGTGTACATGGCATCTATCATCTTAGTTGTGATTTTCCTCGCCTTCTTCATGCAAGTGATGAAAAGTACAAGCTGATGGAACCCTTTTTCGGAGAGAGACCATCAGATTATTGGTATTTTGTCAAATCATGGGAAGGAGTAACAGGGATTATAATGGTTGTGCTAATGGCAATAGCTTTTACGTTGGCCAATCCTGCATTCAGGAGAGGCAGGACCAAACTACCCAAACCCTTCAACAAACTCACAGGTTTCAATGCCTTTTGGTATTCTCATCATCTCTTCGTTTTTGTCTATGCCCTCTTGGTTGTGCATGGAATCAAACTTTACTTGACTACGGAATGGTACAAGAAAACGACATGGATGTATCTGGCTGTTCCCATTACCATTTATGCATTGGAAAGACTGATTAGAGCACTGAGATCAAGCATTAAGTCTGTCAAAATATTGAAGGTGACTCTTTATCCTGGAAATGTGTTATCACTTAAAATGTCAAAGCCACAGGGGTTTAGCTACAAAAGTGGACAATACATGTTTGTCAATTGTGCTGCTGTGTCTCCATTCGAATGGCATCCATTTTCCATAACTTCAGCCCCTGATGATGATTACCTCAGCGTTCACATAAAAATACTTGGTGATTGGACCCGAAGTCTGAAAACCAAATTCTCACAGGCATGCCAACAACCCCTCAATGGGCAAAGTGGACTTCTAAGAGCAGAATGCTTGAAAGAAGATAACAGTTCAATATCTTTCCCGAAAGTGCTGGTTGATGGACCATACGGGGCTCCAGCACAGGACTACAGGGAGTACGAGGTGGTTCTGCTGGTGGGGCTAGGAATAGGGGCTACCCCAATGATAAGCATTGTGAAGGACATGGTGAAGAGGTTGAAGGAGATAGAGGAGATAGAGGAGGAAGAGGAGAGGGGAATGGAGGAGGGAGCAGCAGCGGTGAAGAGTGGTGGTGAGTTCAAGACAAGGAGGGCATACTTCTACTGGGTGACAAGAGAGCAGGGTTCCTTCGACTGGTTCAAAGGGGTGATGAACGAGGTGGCCGAAGAGGATCGAAGGAAGGTGATCGAGCTCCACAGCTACTGCACCAGCGTCTACGAAGAAGGTGATGCTCGCTCTGCTCTCATTGCCATGCTGCAGTCCATCAACCATGCCAAGAATGGCCTCGACATTGTCTCTGGCACTCGTGTCATGTCTCACTTCGCCAAGCCCAATTGGCGCAATGTTCACAAACGCATTGCCCTTAATCATCCACATGCTCGTGTTGGGGTGTTTTACTGTGGGCCATCAGCCCTCACTCGTGAGCTTCGTCAGCTGTCTTTAGATTTCTCTCACAACACATCCACCAAGTTTGATTTCCACAAAGAAAATTTCTGA 2706 0.4553 MGGASADLHQHESDIELSHAERTDTNLGASESKAATDVGLDSGIKSQAEAEGHYVEVTMDIHGDSVALHSVKAFGGVDVVEEEGEKLGLTGKRFEKKRSFSASMVQSAAIRMKQLKRLASFSKPAPKHFERTKSAVAHALTGLKFISTTDGGEGWIKAEERFKNLAGADGYLPRALFAQCLGLNKESEAYAEKLFDTLARQRGIQGGSINHIQFKEFWDNISDQSFDARLKTFFDMVDKDADGRITEEEIKEIICLSATANKLSIIQKQAEEYAALIMEELDPDDSGYIMIDSLETLLLHGPEETTRGESKNLSQMLSQKLKPTYLDSTIMRWYRDARYFLLDNWRRSWVLALWIGVMLGLFAYKFVQYRRKAAYEVMGHCVCMAKGAAETLKLNMALILLPVCRNTITWLRNKTKLGAVVPFDDNINFHMVIAVAIAIGVGVHGIYHLSCDFPRLLHASDEKYKLMEPFFGERPSDYWYFVKSWEGVTGIIMVVLMAIAFTLANPAFRRGRTKLPKPFNKLTGFNAFWYSHHLFVFVYALLVVHGIKLYLTTEWYKKTTWMYLAVPITIYALERLIRALRSSIKSVKILKVTLYPGNVLSLKMSKPQGFSYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIKILGDWTRSLKTKFSQACQQPLNGQSGLLRAECLKEDNSSISFPKVLVDGPYGAPAQDYREYEVVLLVGLGIGATPMISIVKDMVKRLKEIEEIEEEEERGMEEGAAAVKSGGEFKTRRAYFYWVTREQGSFDWFKGVMNEVAEEDRRKVIELHSYCTSVYEEGDARSALIAMLQSINHAKNGLDIVSGTRVMSHFAKPNWRNVHKRIALNHPHARVGVFYCGPSALTRELRQLSLDFSHNTSTKFDFHKENF 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03180 901 Pfam Respiratory burst NADPH oxidase 129 228 IPR013623 GO:0004601|GO:0050664
Phco4g03180 901 FunFam Respiratory burst oxidase protein A 701 901 - -
Phco4g03180 901 SUPERFAMILY Riboflavin synthase domain-like 586 702 IPR017938 -
Phco4g03180 901 Gene3D - 701 901 IPR039261 -
Phco4g03180 901 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 577 706 IPR017927 GO:0016491
Phco4g03180 901 CDD NOX_Duox_like_FAD_NADP 589 901 - -
Phco4g03180 901 Pfam Ferric reductase like transmembrane component 387 543 IPR013130 -
Phco4g03180 901 Gene3D Translation factors 573 674 - -
Phco4g03180 901 Gene3D - 129 246 - -
Phco4g03180 901 Pfam Ferric reductase NAD binding domain 710 883 IPR013121 GO:0016491
Phco4g03180 901 Pfam FAD-binding domain 585 703 IPR013112 GO:0016491
Phco4g03180 901 ProSitePatterns EF-hand calcium-binding domain. 238 250 IPR018247 -
Phco4g03180 901 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 708 901 IPR039261 -
Phco4g03180 901 PRINTS Cytochrome B-245 heavy chain signature 525 545 IPR000778 GO:0016020|GO:0016491
Phco4g03180 901 PRINTS Cytochrome B-245 heavy chain signature 715 732 IPR000778 GO:0016020|GO:0016491
Phco4g03180 901 PRINTS Cytochrome B-245 heavy chain signature 692 705 IPR000778 GO:0016020|GO:0016491
Phco4g03180 901 PRINTS Cytochrome B-245 heavy chain signature 433 451 IPR000778 GO:0016020|GO:0016491
Phco4g03180 901 MobiDBLite consensus disorder prediction 1 36 - -
Phco4g03180 901 SFLD NADPH oxidase subgroup (NOX) 127 901 - -
Phco4g03180 901 PANTHER NADPH OXIDASE 190 901 - -
Phco4g03180 901 SFLD Ferric reductase subgroup (FRE) 323 901 - -
Phco4g03180 901 SUPERFAMILY EF-hand 153 302 IPR011992 -
Phco4g03180 901 ProSiteProfiles EF-hand calcium-binding domain profile. 225 260 IPR002048 GO:0005509
Phco4g03180 901 FunFam Respiratory burst oxidase homolog A 573 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03180 Phco-Chr4 52542472 52547559 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03180 4 52542472 52547559 Phco4g03180 4 52542472 52547559 ECH
Phco4g03180 4 52542472 52547559 Phco7g01919 7 23461891 23467013 PCT