Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02987 ATGACCGATTCTTCTCCTCTTATCCCTCCATCACCGGTCACTGACATCGACCTTGAAGCCTCTCCCTCCCAACAAATTCAATGCCGAATTTGTCTTGAAACTGATGGTAGACATTTCATTGCCCCTTGCAAATGCAGAGGGACGTCAAAGTATGTACATCGAGAGTGTTTGGATCATTGGCGAGCGGTTAAGGAAGGGTTTGCATTTGTTCACTGCACTACCTGCAAGGCTCCATACCATTTACGTGTTCTTGATGCTTACAGAAAATGGCGTACTTTCAAATTTTGGTTTTTTGTAACCAGAGACATTTTAATCATATTTCTGGCTGTACAGCTTGTCATTGCTGCACTGGCCTATTTCGCTTATCTAATAGATGGCTACCAGCAGTACTGGCTTCGTCTTGTTTGGGGTTTTGACAATGTGTTAAGCTTTTACTATATATGTGGAGCACTGTTGTTTTTTGTGTTGCTTGGTCTCTCTGGATGCTTTATCACTTGTTCTGATGAAAGAGTTCGCAATGATTTGGGTCAGCCATGTCGAGAAATATATCTTTGTTGCTGTCAACCTGGAGTTTGTGCCGACTATAATTATCGAGGTACTCCTTGCATGTGGCTTGAATGTACTTCTTGCTTTGAGAGTTGTGGAAACATGGAAACTGAATGTTGTGGTTGTATGAGAGGTTCCGAGGAAACAAAGCTACCATTATTATTCATAATGACTTTGATTTTTCTAGTACTCTTTGCTGTAATTGGGATATTTTACAGTGTATTAGTGGCTACAATGGTAGCACAACGGATATGGCAGCGTCATTATCACATACTTGCAAAAAGGATGCTAACAAAGGAATATGTCGTTGAAGACATTGATGGAGAGATAACAGGGTCTGATTGGTCTCCTCCATCCCTCCCACCGGAGCATGTACAACACCTGAAAACATTGGGCCTTCTATGA 951 0.4175 MTDSSPLIPPSPVTDIDLEASPSQQIQCRICLETDGRHFIAPCKCRGTSKYVHRECLDHWRAVKEGFAFVHCTTCKAPYHLRVLDAYRKWRTFKFWFFVTRDILIIFLAVQLVIAALAYFAYLIDGYQQYWLRLVWGFDNVLSFYYICGALLFFVLLGLSGCFITCSDERVRNDLGQPCREIYLCCCQPGVCADYNYRGTPCMWLECTSCFESCGNMETECCGCMRGSEETKLPLLFIMTLIFLVLFAVIGIFYSVLVATMVAQRIWQRHYHILAKRMLTKEYVVEDIDGEITGSDWSPPSLPPEHVQHLKTLGLL 316
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02987 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 87 IPR013083 -
Phco4g02987 316 SMART ringv_2 27 76 IPR011016 GO:0008270
Phco4g02987 316 Pfam RING-variant domain 28 75 IPR011016 GO:0008270
Phco4g02987 316 CDD RING_CH-C4HC3_MARCH 28 76 - -
Phco4g02987 316 ProSiteProfiles Zinc finger RING-CH-type profile. 20 82 IPR011016 GO:0008270
Phco4g02987 316 SUPERFAMILY RING/U-box 23 80 - -
Phco4g02987 316 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 315 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco4g02987 Phco-Chr4 50993118 50996600 Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02987 4 50993118 50996600 Phco4g02987 4 50993118 50996600 ECH
Phco4g02987 4 50993118 50996600 Phco2g02843 2 57695890 57701177 PCT