Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02981 ATGGCCACCACACTCGCTTGGAGACACGCTGCCAACAATGCAAATGATCTGGTACCTTCTTCTTCACAGCAATTTCATCTTTCTCTTCTTGTGCCAACGTTTCGCGATTCTGGGAAGTGTCACTGGGGATCATTCATTCATGGACGTTTAAAGGAACTATGTGATTTAATTGTGCAGATGTGGAGGGAAAGAAATGGTGATAGGAATACTCAAGATTCAGAGCCCCCAACACCACATTCTGTTCTGAAGATGGGATTTAGAGAGCGCAACAGCAGCATGGAGGATCCAGATGGAACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCTTATTCTGTGCAGGAGAAAGAGTATTCCTTAAGGCAGCTATTGGAGCTTATAGATATGCGTGAAAATGCTTTTAGTGCGGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCAGGTCTGGTTCATTGAATGTGAAGATACAGGCAGCGACCGTCTTGGGCTCCCTTTGTAAAGAAAATGAGCTAAGGGTGAAGGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTAGTCTATTAAAGTCCAGTTCTACTGAAGGACAAATTGCTGCTGCAAATACTATTTATGCTGTCTCTCAGGGTGGTGTAAAGGATCATGTTGGTTCAAAAATATTTTCAACTGAAGGAGTTGTACCAGTGCTCTGGGAGCAGTTGAAAACTGGCCTGAAGGCAGGAAATGTAGTTGAAGGTTTATTGACTGGTGCATTGAAAAATCTCTCCAGCAACACTGAGGGATTCTGGAATGCAACTATACGAGCTGGAGGAGTCGACATATTAGTGAAGTTACTGGCAAAAGGACAGCCCAGTAGTTTAGGTAATGTGTGCAATTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCGGAGGTGACAAAACAACTTCTGAAACTATTAGGCCCTGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCCCAGTGCAAAGAGGCAAGGCGAGAGATAGCAAATGCTAATGGTATTCCTTCTCTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAGGAGAATGCTATGAGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTACGTCATATCTAGCCTTGGTCAAAGTCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTGGCATCAGCTCTCATGATATATGATAACAAGGCTGAATCAACCAGAGCATCAGATCCTTTGGTTGTCGAGCAGACATTACTCAAACAATTTGAGCCTCGCTTGCCCTTCCTTGTAAAGGAACGAACCATTGAAGCGCTAGCTAGTTTGTATGGAAATTCCGTACTTTCAAATAAACTTGCAAATGCTGATGCAAAACATCTGCTAGTTGGTTTGATAACAATGGCTGCAAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACAGTGTGCAAAAGTGAAGGCAGTCTGTGGCGTGCACTTCAGGGCCGTGAAGGAGTTCAGCTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAGCAAGAGTGTGCAGTTGCCCTGCTTTGCCTTCTATCATTTGAAAATGATGAAAGTAAATGGGCAATTACTGCAGCTGGTGGCATACCTCCACTTGTTCAAATTTTGGAGACAGGATCAGCAAAAGCGAAGGAAGATTCAGCAACAATCCTTAAGAACCTGTGCAATCATAGCGAAGATATACGTGCTTGTGTTGAAAGTGCGGATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGATATTGCTGCAAAGACTTTAAATCATTTAATTCATAAATCCGATACTACAACCATTAGTCAGCTTACAGCTTTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGATGCTTTGAGAAGTATGCTTTCTGTTGCTCCCCTTAGCGACATTTTACGGGAAGGTAGTGCTGCCAGCGATGCATTTGATACTATGATAATATTATTGAGCTCTGCCAAAGAAGAAACTCAGGCAAAGTCTGCATCAGCTCTGGCAGGAATTTTTGAAACAAGGAAAGATGTGCGTGAAAGTAGCATTGCTGTCAAAACTCTTTTGTCAGCCAAGAAGTTTCTCAATGCTGAATCTGAAAGTATCCTGATTGAGTCCTCCCACTGCATGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCTATCGCTAGAGATACATTATCCCCTCTGGTTTCACTAGCAAACTCTTCAGTTTTGGAAGTTGCAGAGATGGCCACGTGTGCTCTGGCAAACCTTATTTTGGATGGTGAAATTGCAGAGAAAGCTATTGCAGAAGAAGTTATCTTACCTGCTACTAGAATATTATGTGAAGGCACAATTTCTGGAAAAACTCATGCCGCAGCAGCAATTGCTCGCCTCCTACATTCTCGGGATGTAGATTATGCTGTAACTGATTGTGTGAATCGTGCTGGGACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTGTTAATGGATCTGTTGCTACATCAGAGGCTCTAGAAGCACTTGCCATCCTGTCCAGGTCGGTAGAGACCAGTGCAAATATTAAATCTGCTTGTGCTGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTGTTGTGTATTGTTGATTCAGAGCCAATGTTGCAGGATAAAACTATTGAGATTTTATCTCGATTATGTAAGGATCAGCCTGTTGTTTTGGGAGATACTATTGTGTCAGCACCTGGATGCATATCTTCAATAGCTAAAAGAATAATTAGTTCCACAAATGTGAAGGTCAAAATTGGCGGAGCAGCACTTCTTATTTGTACTTCTAAAGCAAATCATCAGAGACTGGTGGAGGATCTGAGTTCGTCGAACTTGTGTGTCGGTCTTATTCGATCTCTTGTTGATATTCTTGTTTCTGAACTGCCTTCTTTGGGTTACCTGGATGATGACAACAAGGAACTCATTAGCATATGCAGGCACACAACAGAAGAGGCCAACAATTCTGAATCCAACAATAGTACTAGCATTATCTGTGGTGTTGACTTGGCGCTATGGCTATTGTCTATTCTTGCTTGTAATGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCATTGACAGGATCTCAAATTGTTTCTCGCAATATTCTCAGATGGACTACAAAGAAGATAGAATCATGTGGATTCATGCTTTGTTGTTGGCAATACTATTTCAAAATAGAGATATCATACGGGCACATCCAACCATGAAATCTGTACCTGCACTTACCAGTTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTCCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAGAGGAATTTTCTCTGGTGCGTTATCCTGATCAAGTGGCTCTTGAGAGGTTGTTTCGAGTTGAAGACATAAGAGTTGGAGCCACTTCTCGGAAGGCTATACCTGCTTTAGTTGATCTGCTCAAACCAATCCCAGATCGTCCAGGGGCACCATTTTTGGCACTTGTACTTTTGACTCAGCTCAGTAAAGATTGTCCTTCAAATATGAGTGTAATGGTGGAGTCTGGGGCCTTAGAGGCACTTACGAAGTATCTTTCACTCAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTTAGCAGTGCTGAAATACGAAGACATGAATCAGCATTTGGTGCTGTTGCTCAACTTGTAGCTGTGCTACGTTTAGGAGGAAGAGGTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTGTTTTCAGCTGACCACATCAGAAATGCAGAGATTGCTCGGCAGGCTGTTCAACCATTGGTGGAGATTCTCAGTACTGGTTCAGAAAAGGAGCAGCATGCTTCCATTGCTGCATTAGTGGGGTTACTGAGTGAAAATCCATCAAGAGCTCTTGCTGTTGCAGATGTTGAGAAAAATGCAGTGGAAGTTCTTTGTAGGATCCTTTCATCAAATTGTTCAATGGACCTGAAAGGGGATGCTGCTGAATTATGTTGTGCTCTCTTTGGAAATACAAGGATTCGGTCCACAGCAGCTGCTGCAAGTTGTGTTGAACCTCTTGTCTCTCTCCTGGTATCTGAGTTCAGTCCAGCTCACATTTCAGTTGTCCGGGCACTGGATAGGCTTGTAGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTAGTTGGCCTACTGTCTGGTACAAATTATATACTACATGAGGCCATTTCCAGAGCTCTAGTCAAGTTGGGAAAAGACAGGCCTGCTTGCAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCGTACTTGACATCTTACATGAAGCACCCGATTATCTATGTGCTACTTTTGCAGAATTGTTGCGTATATTGACTAATAATACTAGCATAGCTAAAGGGCCATCTGCTGCTAAAGTGGTTGAACCATTGTTTTTGTTACTGACAAGGCAGGAATTTGGGCCAGATGGACAGCACAGTGCATTGCAGGTGTTGGTTAATATCTTAGAACATCCAAAGTGTCGTGCTGACCATTCATTAACTTCTCGCCAAGTTATTGAACCACTTATCCCTTTGCTTGATTCTCCAATTTCAGCAGTGCAACAATTGGCTGCTGAGCTTCTTTCACATCTACTTCTTGAAGAACGCCTTCAGAAGGATCCTGTGACACAGCAGGCAATTGGCCCCCTCATTCGAGTTCTTGGTTCTGGTATACACATATTGCAACAGAGAGCTGTAAAAGCCCTTGTTAGTATTGCACTAACATGGCCAAACGAAATTGCTAAGGAGGGTGGTGTTGTTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCATGCTTTATGGGAGTCTGCTGCCTCCGTTTTGTCAAGTATTCTGCAGTTTAGCTCTGAATTCTACTTGGAAGTGCCTATTGCTGTATTGGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACGGTTGTTGGTGCTTTAAATGCTCTTCTGGTGCTGGAAAATGATGATGGAACTAGTGCAGAAGCTATGTCAGAAAGTGGAGCTATAGAGGCTCTCTTGGAGCTCCTACGATCTCATCAGTGTGAGGAAACTGCTGCAAGGCTTTTAGAAGTATTGCTGAACAATGTAAAGATTCGAGAAACAAAAGTAACAAAATCAGCTATCATACCATTATCGCAGTACCTTTTGGACCCACAAACTCAAGCTCAGCAAGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTGTTTCAGAATGAGGGTCTTGCTCGAACAAGTGGCGCGGTTTCAGCTTGTCGTGCTTTAGTAAATGTTCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAGAATCTTGTGATGTACAGTCGATCAAATAGGAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCTAGTAATCCAGAAACATCAGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCCATAACTGCTGCTATTGAAAAAGATTTATGGGCTTCTGGAACTGTGAATGACGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTTAGAGCAACTGAACCAGCGACACTTAGCATTCCCCATCTGGTTACAGCCTTAAAGACAGGTTCAGAAGCTTGTCAGGAAGCAGCATTGGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCTAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCATTGCTGCAGTACTTGATCCAGTCTGGGCCACCTCGGTTTCAGGAGAAAGCAGAATTTTTATTGCAGTGTTTGCCAGGAACATTGGTAGTGATCATCAAACGTGGTAACAACATGAAGCAATCTGTTGGAAACCCAAGTGTTTACTGCAAGCTTACACTTGGCAACACTCCCCCAAGGCAAACCCAGGTGGTTTCAACTGGCCCAAATCCGGAGTGGGATGAGAGCTTTTCATGGACCTTTGAGAGTCCTCCCAAAGGCCAGAAGCTTCATATCTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGAAAAGTAACAATCCAAATTGATCGAGTGGTAATGCTTGGATCAGTAGCAGGAGAGTACGCTTTGTTGCCTCAAAGTAAAAGTGGGCCGCCACGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6576 0.4299 MATTLAWRHAANNANDLVPSSSQQFHLSLLVPTFRDSGKCHWGSFIHGRLKELCDLIVQMWRERNGDRNTQDSEPPTPHSVLKMGFRERNSSMEDPDGTLASVAQCIEQLRQSSYSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSTEGQIAAANTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEQLKTGLKAGNVVEGLLTGALKNLSSNTEGFWNATIRAGGVDILVKLLAKGQPSSLGNVCNLLASVMMEDASVCSKVLTAEVTKQLLKLLGPGNDDSVRAEAAGALKSLSAQCKEARREIANANGIPSLINATIAPSKEFMQGECAQALQENAMSALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFEPRLPFLVKERTIEALASLYGNSVLSNKLANADAKHLLVGLITMAANEVQDELIKALLTVCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSFENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSDILREGSAASDAFDTMIILLSSAKEETQAKSASALAGIFETRKDVRESSIAVKTLLSAKKFLNAESESILIESSHCMAAIFLSIKENRDVAAIARDTLSPLVSLANSSVLEVAEMATCALANLILDGEIAEKAIAEEVILPATRILCEGTISGKTHAAAAIARLLHSRDVDYAVTDCVNRAGTVLALVSFLDSAVNGSVATSEALEALAILSRSVETSANIKSACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEILSRLCKDQPVVLGDTIVSAPGCISSIAKRIISSTNVKVKIGGAALLICTSKANHQRLVEDLSSSNLCVGLIRSLVDILVSELPSLGYLDDDNKELISICRHTTEEANNSESNNSTSIICGVDLALWLLSILACNDEKNKIAIMEAGAIDVLIDRISNCFSQYSQMDYKEDRIMWIHALLLAILFQNRDIIRAHPTMKSVPALTSLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALVLLTQLSKDCPSNMSVMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRRHESAFGAVAQLVAVLRLGGRGARYSAAKALESLFSADHIRNAEIARQAVQPLVEILSTGSEKEQHASIAALVGLLSENPSRALAVADVEKNAVEVLCRILSSNCSMDLKGDAAELCCALFGNTRIRSTAAAASCVEPLVSLLVSEFSPAHISVVRALDRLVDDEQLAELVAAHGAVVPLVGLLSGTNYILHEAISRALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCATFAELLRILTNNTSIAKGPSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPKCRADHSLTSRQVIEPLIPLLDSPISAVQQLAAELLSHLLLEERLQKDPVTQQAIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVVEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVVGALNALLVLENDDGTSAEAMSESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIIPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSGAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTALKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWDESFSWTFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK 2191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02981 2191 SUPERFAMILY ARM repeat 105 435 IPR016024 -
Phco4g02981 2191 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 69 2191 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Phco4g02981 2191 SUPERFAMILY ARM repeat 701 1026 IPR016024 -
Phco4g02981 2191 Coils Coil 337 364 - -
Phco4g02981 2191 Gene3D - 1741 1861 IPR011989 -
Phco4g02981 2191 Gene3D - 1405 1557 IPR011989 -
Phco4g02981 2191 Pfam C2 domain 2070 2159 IPR000008 -
Phco4g02981 2191 SUPERFAMILY ARM repeat 467 771 IPR016024 -
Phco4g02981 2191 SUPERFAMILY ARM repeat 1447 1696 IPR016024 -
Phco4g02981 2191 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2070 2173 IPR035892 -
Phco4g02981 2191 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2070 2191 - -
Phco4g02981 2191 ProSiteProfiles C2 domain profile. 2051 2168 IPR000008 -
Phco4g02981 2191 Gene3D - 1558 1740 IPR011989 -
Phco4g02981 2191 SUPERFAMILY ARM repeat 1121 1479 IPR016024 -
Phco4g02981 2191 Gene3D - 1862 2066 IPR011989 -
Phco4g02981 2191 Gene3D - 693 913 IPR011989 -
Phco4g02981 2191 Gene3D C2 domain 2068 2191 IPR035892 -
Phco4g02981 2191 Gene3D - 915 1404 IPR011989 -
Phco4g02981 2191 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1420 1654 - -
Phco4g02981 2191 SMART arm_5 1269 1310 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 773 811 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 522 563 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 1479 1519 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 351 400 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 1438 1478 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 1770 1809 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 176 216 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 607 647 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 1609 1647 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 565 605 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 134 175 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 1224 1267 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 857 899 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 1897 1937 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 1352 1392 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 1521 1561 IPR000225 GO:0005515
Phco4g02981 2191 SMART arm_5 308 349 IPR000225 GO:0005515
Phco4g02981 2191 CDD C2 2072 2162 - -
Phco4g02981 2191 SMART C2_3c 2071 2167 IPR000008 -
Phco4g02981 2191 Pfam Armadillo/beta-catenin-like repeat 144 174 IPR000225 GO:0005515
Phco4g02981 2191 Pfam Armadillo/beta-catenin-like repeat 565 604 IPR000225 GO:0005515
Phco4g02981 2191 SUPERFAMILY ARM repeat 1620 2065 IPR016024 -
Phco4g02981 2191 Gene3D - 88 450 IPR011989 -
Phco4g02981 2191 Gene3D - 453 692 IPR011989 -
Phco4g02981 2191 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 576 618 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02981 Phco-Chr4 50937844 50947967 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02981 4 50937844 50947967 Phco4g02981 4 50937844 50947967 ECH
Phco4g02981 4 50937844 50947967 Phco2g02852 2 57741807 57752949 PCT