Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02852 ATGATAACAGCAAATGCTTACGGTGCGCAAGTGCGAACTACAAGACCCACTCTGATTTTATTGCATCATAATCTAACTCATGACTTGCCAGTTGCCGTTCCAGCTGGCACAAATAACATGTTAAACGAATGTGAAGCCATTAAGCCACAAAGCTTAGAGAGGGTGGAGCTGTTGTCGGTGCTCCTAATGTGTCTACGCGAAGCGAAGCTGGCGACCACACGGACTTGGAGGTTTGCTGCCCATAATGGCAGCACACTTGCTGCTAATGATATGGAAAGAAATGGTGATGGGAGGGCTCAAGATTCAGAGACTCTACCTCCCCATTCTGTTTTAAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCTGATGGGACATTAGCCAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAGGAGAAAGAGTATTCTTTGAAGCAGTTATTGGAGCTTATTGATATTAGAGAAAACGCTTTCAGTGCTGTTGGATCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGGTCTTCAAATGTGAAGATACAGGCAGCAACTGTATTGGGTTCACTTTGTAAAGAAAATGAGTTGAGGGTGAAAGTCCTGCTTGGAGGATGCATTCCACCTTTGCTTGGTCTACTCAAGTCCAGTTCTGCTGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTTTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACCGAAGGAGTGGTTCCAGTGCTATGGGAGCAGTTGCAAAAGGGCCTGAAGACAAATGTAGTTGATAATTTATTAACCGGGGCATTGAAAAATCTCTCCAGCAGCACTGATAGATTCTGGAATGCCACAATACAAGCTGGAGGGGTGGACATATTAATTAAGTTACTGAAAACAGGGCAGTCTAACACTTTAGCAAATGTGTGCTTTTTACTTGGCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAATTGTTGACTTCTGAGGAAACTAAACAACTCCTCAAACTTTTAAGCCCTGGTAATGATGCCCCTGTCAGGGCTGAAGCAGCCGGTGCTCTTAAATCTCTTTCTGCTCAGTGCAAAGATGCAAGAAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCATTACAGGAGAATGCAATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCACCTGCCCAAGCTGCTGACACGTTGGGGGCTTTAGCTTCAGCTCTTATGATTTATGATGACAATGCAGAATCTACCAGGGCCACAGATCCTTTGGTAGTTGAGCAGACATTACTTGAACAATTTAAACCTGGCTTGTCATTCCTTGTACAGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATAGCAATCCTATACTGTCAATCAAACTTGCAAATTCTGATCCAAAGCGTTTGCTTGTTGGTTTAATAACAATGGCTGCCAATGAAGTGCAAGATGAACTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGCAGTCTTTGGCATGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCGGAACAGCAGCAAGAATGTGCTGTTGCCCTCCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCTATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCGTCAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGCTTTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCGAAGACTTTGAATCACTTAATTCATAAGTCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACCAGTGATTTACCTGAATCTAAGGCTTATGTTTTAGATGCTTTGAAAAGTATGCTTTCAGTTGTTGCTCTTACTGATCTTCTACGTGAAGGTAGTGCTGCCAGCGATGCAGTTGATACAATGATAAAATTACTGAGCTCAACAGATGAAGAAACTCAGGCAAAGTCTGTGTCTGCTCTGGCGGGAATTTTTGAAATGAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCGGCAATGAAGTTGCTTAATGTTGAATCAGAAAGTATCTTAATGGAGTCCTCACGCTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTGGTTGCTATTGCTAGAGATGCTTTACCCTCCCTAGTTTCACTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGACAGTGAAATTGCTGAGAAAGCTGTTGCAGAAGAAGTCATATTGGCTGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGAAAATCACATGCTGCTGCAGCAATTGCTCGCCTTTTACATTCCAAGAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGAGCTGGCACTGTTCTTGCATTAGTTTCTTTCTTAGACTTTGCTATCAGTGGACTTAGTTCCACATCAGAAGCTCTAGAAGCACTTGCCATGCTGTCCAGGTTAGAAGTGAATGGTGCACACAGTAAGCCTGCTTGGGCAGTTTTGGCTGAATTTCCTAAAAGCATCAGCCCAATAGTTCTGTCCATTACTGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATTTTATCTCAATTATGTAAGGATCAACCTTTTGTTCTGGGAGACATTGTTGTTTCTGCCTCTGGATGTATATCTTCTATAGCTAAGAGGATAATCAATTCCACTTCTCAAAATATAAAGGTCAAAATTGGAGGAGTTGCTGTTCTTATTTGTGCTGCTAAAGTAAATCACCAGAGGCTGGTGGAGGATCTCAATCTATCAAACTTGTGTGGTAATCTAGTTCAGTCTCTTGTCGATATACTTATTTCTTCACAGGCTACTTTGGGTTATCAGCGTGATGACAGCAGGGACGTTATCAGAATTTGCAGGCATACAAAAGAAGTCAATGATGGTAAATCAAGCACTGGCACCACTATTATTTCCGGTGCCAACTTAGCTATATGGTTACTGACTGTTCTTGCTTGCCATGATGAAAAATGTAAAACTGCAATAATGGAGACGGGTGCAATTGAGTTTCTGAGTGACAGGATTGCAAATTGTTTCTCACTGTACAGTCAGATTGACTACAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAGGATAGGGATATTATACGAGCACATGCAACCATGAAATCTATACCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTCCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTCATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTAGAATTGTCAGAGGAATTTTCTTTGGTGCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGACGACATAAGAGTTGGTGCTACTTCTCGGAAGGCAATACCTGCTCTAGTTGATCTGCTCAAACCAATTCCAGAACGTCCTGGTGCACCATTTTTAGCACTTGGACTTTTGACTCAGCTTGCTATAGATTGTCCATCAAATAAGATTGTAATGGTTGAGGCAGGTGCCCTAGAGGCACTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACGGAAGAAGCTGCTACGGATCTGTTAGGGATTCTGTTTAGCAGTGCAGACATACGGAGACATGAATCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTACTGCGTTTAGGAGGAAGAGCTGCAAGGTATAGGGCTGCAAAAGCTTTGGAAAGTTTGTTCTCCTCTGACCACATTAGAAATGCAGAGACTGCTCGACAAGCTGTCCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTAGTTAGGTTATTGAGTGAAAACCCTTCAAAAGCACTTGCTGTTGCAGATGTAGAGATGAATGCAGTGGATGTTCTTTGTAGGATTCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGGATTCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCTCTTGTCTCTCTCCTTGTCAGTGAGTTTGGTCCTTCTCACCATTCAGTTGTGCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTAGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTTTATGGAAGGAATTATGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTGGGAAAAGACAGGCCAGCTTGCAAAATGGAAATGGTGAAAGCTGGAATTATTGAAAGCATACTTGATATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCTGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCACCGGCTGCTAAAGTCGTTGAACCACTGTTTATGTTGCTAATAAGACAAGACTTTGGACCAGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACACCCACAGTGTCGTGCTGATTACACATTGTCTTCTCACCAAGCTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCAGCTGAGCTTCTCTCACATCTTCTTTTAGAAGAACACCTTCAGAAAGATCCAGTAACACAGCATGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAACAGAGAGCTGTGAAGGCCCTGGTCAGTATTGCACTGCTATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAAGCAGATCCTTCCATTCCTCATGCTTTATGGGAATCAGCAGCGTCTGTTTTGGCTAGTATTCTGCAATTTAGTTCTGAATACTACCTGGAAGTTCCAGTTGCTGTTTTGGTTAGGCTGCTTAGATCTGGCTTAGAAAGCACAGTTGTTGGTGCATTAAATGCTCTCCTTGTGTTGGAAAGTGATGATGGAACTAGTGCCGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTAGAGCTCCTAAGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTCTTAGAAGCATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACATTGGCTCTTGGCGATCTATTTCAGAACGAGGGTCTTGCTCGGTCAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTACAAAACCTTGTGATGAACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGGGTTCAGGTTATTCTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGAACTGTGAACGAAGAGTATCTTAAAGCCTTAAATTCTCTCTTTAGCAACTTCCCTAGACTGAGAGCAACTGAGCCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTAAAGACAGGCTCTGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGTTCAGCAGAAGTTTCAAGAGCTCAATCAATAGCAGCTGCAGATGCCATTCCTTTGCTGCAGTACTTAATCCAGTCTGCCCCTCCTCGCTTTCAGGAGAAGGCAGAGTTTTTATTGCAGTGTTTGCCTGGAACTTTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAATCTGTTGGAAACCCAAGTGTTTTTTGCAAGCTTACGCTTGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGAAGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATCGATCGGGTAGTAATGCTAGGAGCAGTATCTGGAGAGTACACTTTGTTGCCAGAAAGTAAGAGTGGCCCCTCGAGGAATTTAGAAATAGAATTCCAGTGGTCTAACAAGTGA 6672 0.4284 MITANAYGAQVRTTRPTLILLHHNLTHDLPVAVPAGTNNMLNECEAIKPQSLERVELLSVLLMCLREAKLATTRTWRFAAHNGSTLAANDMERNGDGRAQDSETLPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLELIDIRENAFSAVGSHSQAVPVLVSLLRSGSSNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTNVVDNLLTGALKNLSSSTDRFWNATIQAGGVDILIKLLKTGQSNTLANVCFLLGCMMMEDASVCSKLLTSEETKQLLKLLSPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQAADTLGALASALMIYDDNAESTRATDPLVVEQTLLEQFKPGLSFLVQERTIEALASLYSNPILSIKLANSDPKRLLVGLITMAANEVQDELLKSLLTLCNTECSLWHALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKAYVLDALKSMLSVVALTDLLREGSAASDAVDTMIKLLSSTDEETQAKSVSALAGIFEMRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENRDVVAIARDALPSLVSLANSSVLEVAELATCAVANLILDSEIAEKAVAEEVILAATRVLREGTISGKSHAAAAIARLLHSKRQVDYAVTDCVNRAGTVLALVSFLDFAISGLSSTSEALEALAMLSRLEVNGAHSKPAWAVLAEFPKSISPIVLSITDSTPVLQDKAIEILSQLCKDQPFVLGDIVVSASGCISSIAKRIINSTSQNIKVKIGGVAVLICAAKVNHQRLVEDLNLSNLCGNLVQSLVDILISSQATLGYQRDDSRDVIRICRHTKEVNDGKSSTGTTIISGANLAIWLLTVLACHDEKCKTAIMETGAIEFLSDRIANCFSLYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLAIDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSADIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSSDHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFGPSHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGIIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPPAAKVVEPLFMLLIRQDFGPDGQHSALQVLVNILEHPQCRADYTLSSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQHVIGPLIRVLGSGIHILQQRAVKALVSIALLWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEALLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARSSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMNSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACSAEVSRAQSIAAADAIPLLQYLIQSAPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWEESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02852 2223 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1897 1940 IPR000225 GO:0005515
Phco2g02852 2223 Gene3D - 112 483 IPR011989 -
Phco2g02852 2223 Gene3D - 1438 1747 IPR011989 -
Phco2g02852 2223 Coils Coil 367 387 - -
Phco2g02852 2223 Gene3D - 723 937 IPR011989 -
Phco2g02852 2223 SUPERFAMILY ARM repeat 948 1231 IPR016024 -
Phco2g02852 2223 FunFam Coatomer beta subunit 1688 2101 - -
Phco2g02852 2223 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2102 2223 - -
Phco2g02852 2223 Gene3D - 525 722 IPR011989 -
Phco2g02852 2223 ProSiteProfiles C2 domain profile. 2085 2200 IPR000008 -
Phco2g02852 2223 SMART C2_3c 2103 2199 IPR000008 -
Phco2g02852 2223 Gene3D - 1752 1868 IPR011989 -
Phco2g02852 2223 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 606 648 IPR000225 GO:0005515
Phco2g02852 2223 SUPERFAMILY ARM repeat 1258 1640 IPR016024 -
Phco2g02852 2223 SUPERFAMILY ARM repeat 130 883 IPR016024 -
Phco2g02852 2223 Pfam Armadillo/beta-catenin-like repeat 595 635 IPR000225 GO:0005515
Phco2g02852 2223 Pfam Armadillo/beta-catenin-like repeat 175 205 IPR000225 GO:0005515
Phco2g02852 2223 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 99 2223 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Phco2g02852 2223 Pfam C2 domain 2102 2198 IPR000008 -
Phco2g02852 2223 CDD C2 2104 2194 - -
Phco2g02852 2223 Gene3D C2 domain 2101 2223 IPR035892 -
Phco2g02852 2223 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1268 1312 IPR000225 GO:0005515
Phco2g02852 2223 SUPERFAMILY ARM repeat 1652 2098 IPR016024 -
Phco2g02852 2223 Gene3D - 1869 2100 IPR011989 -
Phco2g02852 2223 MobiDBLite consensus disorder prediction 88 109 - -
Phco2g02852 2223 Gene3D - 946 1437 IPR011989 -
Phco2g02852 2223 SMART arm_5 716 756 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 1929 1969 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 1553 1593 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 1470 1510 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 554 593 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 800 841 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 1511 1551 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 207 247 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 338 379 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 595 635 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 637 677 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 1301 1342 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 1256 1299 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 381 430 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 165 206 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 1802 1841 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 888 930 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 1637 1679 IPR000225 GO:0005515
Phco2g02852 2223 SMART arm_5 1383 1424 IPR000225 GO:0005515
Phco2g02852 2223 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2101 2220 IPR035892 -
Phco2g02852 2223 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1452 1686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02852 Phco-Chr2 57741807 57752949 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02981 4 50937844 50947967 Phco2g02852 2 57741807 57752949 PCT