Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02976 ATGTTCTTACCAAAACCCGAAAGGTCTCTGTATGAATTATTAAAAAGGGTGCTTTCTCTTTTTCAACAACCACTGCCACTTTCTCGTTTAACTCTCTTCATCTCCCTTCTGTTCTGTTCTCTCCTGTTCTGTTGGCCTATGGCGAACACTGTACATAACGGTGCCAACTGTGGAATCCCTTTACGGAACCAATCCCTGCCCTTATCTCGTCACGTTTCCAGATCCCCCTCTTTCCTTCCCAAAACACGCGCCGGAAAACAATCAAACACCTTCGCCGTGAAGGCTTCGCAAGCTGACTTCCCCGTTGACCCTTCCATCAGTCCACGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGCGACCTCGCCACCTCCCTCGTCCAAGCCGGCGTTCCCGTCATTCGACTCGCCGCCGGCGAGCCTGATTTCGACACGCCCGCTCCCATCGCGGAGGCTGGGATTAATGCAATTCGCGAAGGTTACACGAGGTACACGCCCAATGCCGGAACCTTGGAATTGCGTCAAGCGATTTGTCGTAAGCTAAAAGAGGAAAATGGGATTACTTATACTCCTGATCAGGTTGTGGTTAGTAACGGAGCCAAACAGAGTCTTGCTCAGGCGGTGCTGGCAGTTTGCTCCCCTGGAGATGAGGTCATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACATCAATATCTGATAATTTTCTCTTAGATCCCAAACTTCTTGAATCCAAAATAACTGAAAGATCGAGGCTGCTTATTCTTTGCTCGCCATCTAACCCAACAGGATCTGTCTACCCTAAGGAATTACTTGAAAAGATAGCCCAGATTGTTGCGAAGCACCCAAGGCTTCTGGTCCTCTCGGATGAAATTTATGAACACATAATTTATGCCCCAACAACTCACACAAGCTTTGCATCTTTACCGGGAATGTGGGACAGAACTCTAACTGTAAATGGATTTTCTAAGGCCTTTGCAATGACGGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCTGCATGTGGAAAGATCCAAAGTCAGTTCACTTCAGGGGCCAGTAGTATTGCCCAGAAAGCTGCAGTTGCTGCATTAGGACTAGGTTATGCTGGTGGGGAGGCAGTTTCTACCATGGTTAAAGCATTTAGAGAGCGAAGGGATTTCTTGGTAAAAAGTTTTAGAGAAATAGATGGTGTCAAGATATCCGAACCTCAGGGAGCATTTTATCTATTCATTGATTTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTCGGTAAAATTGAGGATTCCGAGTCCCTCTGTCGATACCTACTGGATGTGGGCCAGGTAGCCTTGGTTCCAGGGAGTGCATTTGGAGATGATACTTGCATCCGCATCTCTTATGCAGAATCCCTTACTACCCTACAGGCAGCTGTAGAAAGAATTAAGAAAGCACTCATCCCTCTAAGCTCTGCTGCACTTGTTTAA 1530 0.4699 MFLPKPERSLYELLKRVLSLFQQPLPLSRLTLFISLLFCSLLFCWPMANTVHNGANCGIPLRNQSLPLSRHVSRSPSFLPKTRAGKQSNTFAVKASQADFPVDPSISPRVNAVKPSKTVAISDLATSLVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTLELRQAICRKLKEENGITYTPDQVVVSNGAKQSLAQAVLAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYPKELLEKIAQIVAKHPRLLVLSDEIYEHIIYAPTTHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLVKSFREIDGVKISEPQGAFYLFIDFSFYYGREAEGFGKIEDSESLCRYLLDVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERIKKALIPLSSAALV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02976 509 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 337 350 IPR004838 GO:0003824|GO:0009058|GO:0030170
Phco4g02976 509 SUPERFAMILY PLP-dependent transferases 106 500 IPR015424 -
Phco4g02976 509 CDD AAT_like 136 498 - -
Phco4g02976 509 FunFam Aspartate aminotransferase 165 387 - -
Phco4g02976 509 PANTHER ASPARTATE AMINOTRANSFERASE 105 500 - -
Phco4g02976 509 Gene3D - 165 387 IPR015421 GO:0003824
Phco4g02976 509 Gene3D Aspartate Aminotransferase, domain 1 119 494 IPR015422 GO:0003824
Phco4g02976 509 Pfam Aminotransferase class I and II 134 496 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02976 Phco-Chr4 50904011 50907849 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02976 4 50904011 50907849 Phco4g02976 4 50904011 50907849 ECH
Phco4g02976 4 50904011 50907849 Phco2g02856 2 57770553 57777326 PCT