Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02856 ATGGTCGGTGCATTAAACTCTGATCTTCCTGTAGTCCCGAATTTGTCTGTCATTCTGTATGCAGCAAAGGACTTAGCTGCGAGTATAACATACCTTTTTTTAAAAAAATGGACCGGACTGGCCACTCCGAATGATGAGGCATTGGAATACCGGACTGGCCAAATTGATGGAGATGTGATGTGTTTGTTTAAAATATCTAGAAATGCCACTCGACAGCATGACGAAGGAAGAATCACTGAGATTCTTCTCATTTACCATCCAACTACACTTGTGATTTTCATGGCCAACATGCTACATAACGGTGCATTGTCTTCTGGTTTCCCATCCCTATCCACGCTTAGAGCCATGCGTAAAGGAAAACACATTGGGCTGAACAGAATGGCTGTGGTGATAAAGGCAAAGTATAATAGCAATTTTGATGACTCGGGCGTTGATATTTCTTTGAGTCACAGAGTTGATGCTGTGAAGCCTTCCAAAACTCTAGCCATATGTGATCATGCCACTGCTCTTTTACAATCAGGAGTTCCTGTTATTCGCTTATTTTTTGGAGAATCTGATTTTGACACACCTGCTGTTATAGCTGAGGCTGGGATGAATGCAATTCGTGATGGTCACACCAGATATACCCCCAATGCTGGAACATTAGAATTGCGCCAAGCAATATGTCACAAGCTAAAAGAGGAGAATGGAATTATATATTCTCCTGATCAGATTGTGGTCAGCAATGGAGCCAAGCAAAGTATTGTTCAAGCAGTGCTTGCAATTTGTTCCCCAGGAGACGAGGTTATTATTCCAGCTCCATACTATGTGAGTTACCCAGAAATGGCAAGACTGGCTCATGCAACACCTGTGATTCTTCCAACCCTCATATTGAATAATTTTCTTTTGAACCCCAAACTGCTAGAAGACAACCTTACAGAAAGATCCAGACTGCTTATTCTTTGTTCACCGTGTAACCCAACAGGGTCTGTCTATCCTAAGAAATTACTTGAAGAGATAGCCCAAATTGTAGCAAAGCACCCCAGGCTTCTGGTTCTTTCTGATGAAAATTATGAACACATAATTTATGCACCAGCAACTCATACAAGTTTTGCATCTTTACCCGGAATGCAGGACAGAACTCTAACTGTGAATGGACTTTCCAAGACATTTGCAATGACTGGTTGGCGGCTCGGGTATATTGCTGGTCCAAAGCATTTTGTTGCAGCATGTGGAAAGATTCAAAGCCAGTTTACTTCAGGAGCAAGTAGTATATCTCAGAAAGCTGCAGTTGCTGCATTAGGATTAGGCTATGCAGGGGGAGAAGCTGTTTCTACCATGGTGAAAGCTTTCAGGGAAAGAAGGGATTTCTTGGTTGAAAGCTTTAGAGATGTGGATGGAGCGAGAATATGTGAACCACAGGGGGGATTCTATGTATTCATTGATTTGAGTTCTTATTATGGAAGAGAAGCTGAAGGGTTCGGTTTAATTGAAAATTCTGACTCCCTCTGTGGCTATCTGCTGGACAAGGGCCAGGTTGCTTTGGTTCCTGGGAGTGCATTTGGAGATGATTCTTGCATCCGAATCTCTTTTGCAGAATCCCTTTCCACTTTAAACACAGCAGTAGAGAGAATTAAGAAAGCACTCATCCCTCTAAGCTCTTCTCCATTTCTTTAA 1656 0.4227 MVGALNSDLPVVPNLSVILYAAKDLAASITYLFLKKWTGLATPNDEALEYRTGQIDGDVMCLFKISRNATRQHDEGRITEILLIYHPTTLVIFMANMLHNGALSSGFPSLSTLRAMRKGKHIGLNRMAVVIKAKYNSNFDDSGVDISLSHRVDAVKPSKTLAICDHATALLQSGVPVIRLFFGESDFDTPAVIAEAGMNAIRDGHTRYTPNAGTLELRQAICHKLKEENGIIYSPDQIVVSNGAKQSIVQAVLAICSPGDEVIIPAPYYVSYPEMARLAHATPVILPTLILNNFLLNPKLLEDNLTERSRLLILCSPCNPTGSVYPKKLLEEIAQIVAKHPRLLVLSDENYEHIIYAPATHTSFASLPGMQDRTLTVNGLSKTFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLVESFRDVDGARICEPQGGFYVFIDLSSYYGREAEGFGLIENSDSLCGYLLDKGQVALVPGSAFGDDSCIRISFAESLSTLNTAVERIKKALIPLSSSPFL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02856 551 PANTHER ASPARTATE AMINOTRANSFERASE 146 542 - -
Phco2g02856 551 FunFam Aspartate aminotransferase 207 429 - -
Phco2g02856 551 Gene3D Aspartate Aminotransferase, domain 1 161 536 IPR015422 GO:0003824
Phco2g02856 551 Pfam Aminotransferase class I and II 177 538 IPR004839 GO:0009058|GO:0030170
Phco2g02856 551 Gene3D - 207 429 IPR015421 GO:0003824
Phco2g02856 551 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 379 392 IPR004838 GO:0003824|GO:0009058|GO:0030170
Phco2g02856 551 CDD AAT_like 178 540 - -
Phco2g02856 551 SUPERFAMILY PLP-dependent transferases 148 542 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02856 Phco-Chr2 57770553 57777326 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02856 2 57770553 57777326 Phco2g02856 2 57770553 57777326 ECH
Phco4g02976 4 50904011 50907849 Phco2g02856 2 57770553 57777326 PCT