Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02923 ATGTTCAAGAAGTCAGGACACCTGATTAAGGATTGTACTGTGCTAATGAGATATGTCCCTCGTAGTAGTGTTTTATTGGACCAACAAGGATTTGCCAAAACCCTACTAAAAACCAAACGGCATAACCGCCCGGTGAAGCAGAAGCAAGCAGAGACGACAACAATGGGTGGTGGTGGGAGAGGAGGCAGGTCCCGCACTCAAAGAAAGCATTTCCGCCAGAGCAGAGAGAACGTGTGGAAGCGTTCCAAATCGGATACCGATCCTTCTTCAGCAGAAAACAATCCTGCATGGACTCCTTTCTCCACCGAGAACGCCGCTTTCGATTTCTACTACAAAGAGCAGGGAATAGTCGACCTCCAACAGTGGGACCAATTCGTTGCTGTTCTCCGAACTCCATTGCCCGCAACCTTCAGAATTAACTCAAGTAGCCAGTTTTCCGACGACATTCGTTCTCAATTGGAGAATGATTTCGTGCATTCTCTTCGCGACGAGGTTGGTGAAGGGGGTGAGACTGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAATTTTGCTTGGCATTCAAATTTTTCTAGGATGCAGCTTAGGAAGAATCAAACGCTTGAGAGGTTCCATGAATTTTTAAAGCTAGAAAACGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTCGATATGTGTGCTGCACCTGGTTCAAAAACATTCCAACTGCTTGAGATTATACACCAATCAAGTAAATCGGGATCACTGCCTGATGGACTGGTTATAGCAAATGATCTCGATGTCCAAAGATGCAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAATCTAATTGTTACAAATCATGAAGCACAACACTTCCCAGGATGTCGATTAAACAGAAATTACGAAAGGATGGAATTAGATCACAATATTGGCCAACTATTATTTGATCGTGTTCTTTGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGCAAGGCACCTGATCTCTGGAGAAAATGGAACACAGGGATGGGACATGGCCTTCACGGCCTACAAATTTTAATTGCTATGCGAGGTATATCTTTACTCAAAATTGGTGGAAGAATTGTTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCGAAGGTGTGGAGGTTCTGTTAAACTTGTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAAGAGATGGAAGGTATATGACAAGGGCACCTGGTTTGTCTCGTATAATGATGTTCCTAAGTTTCGTAGAAGTGCAATTCTTTCTAGTATGTTTCCTTCTGGTAGAGGTCATCATGATGTTGATAGTAGTTGTAATGTTAACGTGGAGGATGTTACTAATGGTATTAATGAAAACACCGGAGATGGTGTTCAACCAGTACAGAATCCTGTTATTTCTGAATCTGCTGAGGAAGCTTCTGATTTTCCTCTTGAGCATTGTATGAGGATAGTGCCTCATGATCAGAATACTGGAGCCTTCTTCATTGCTGTTCTGCAAAAAGTTTCTCCTTTGCCTGTAATTCCAGAAAAAACAAAAATAAAAATTGATGAGCAATGTGTAGAACCAGCAAACCAGAGTTTACAACAGATCACTTTACCAGAAAATGCACGTGAAGAAGACTTGAAAGCAGTTTCAGAGGAAAATGTAGATGACAATGAACCCAATGCCGAAGATATGGAAGATGATCCTGATACACGTGAAGAACAGAATACCAAGGAAACTCTAGTGCCTGATAATGTAGAAAACCCGATGAAGAGGGTTCCAGGCAAGAGAAAGCTACAAATTCAGGGGAAATGGAGGGGTGTTGATCCTGTTGTCTTTTTCAAAGATGAAACAATAATTAATAGTATAAGGGATTTTTATGGAATTGATGAGCGTTTTCCATTCAACAGTCACCTTGTTACAAGAAATAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCCAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCAAAGTTGGGCAGCAACTTAAAATAACCTCTATCGGCCTGAAGATGTTTGAAAGACAGACAGCACGAGAAGGTAGCTCTGCACCATGTGCTTTCCGGATATCGTCTGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAGATTCTGCATGCATCTCCTGCAGACTTCAAGCATCTTCTGCAGAACAAAGAAGTAAAATTTGAAGATTTTGCTGATGCCAAGTTCGGTGAAAAGGCAGCAAACCTATTGCCCGGCTGTTGTGTGGTAATTCTGGGTACAGGAAACACAGTTGCTGTAGAGTCTCTCCGAGTGGATGAGTCAACGATAGCCATTGGATGCTGGAGGGGTAGAGCGAGATTGTCTGTGATGGTTACTGCAATGGACTGCCAAGAACTACTTGAAAGGCTTTTAATACGATTTGACAATGGAAATGGTTCATCTGGCCATGTCGGCAAATCCTCTAATAATGAGGAAGAAATAGGAGCTGTGCAAGAGTAA 2586 0.4246 MFKKSGHLIKDCTVLMRYVPRSSVLLDQQGFAKTLLKTKRHNRPVKQKQAETTTMGGGGRGGRSRTQRKHFRQSRENVWKRSKSDTDPSSAENNPAWTPFSTENAAFDFYYKEQGIVDLQQWDQFVAVLRTPLPATFRINSSSQFSDDIRSQLENDFVHSLRDEVGEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSSKSGSLPDGLVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERMELDHNIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHGLQILIAMRGISLLKIGGRIVYSTCSMNPIENEAVVAEVLRRCGGSVKLVDVSSELPQLIRRPGLKRWKVYDKGTWFVSYNDVPKFRRSAILSSMFPSGRGHHDVDSSCNVNVEDVTNGINENTGDGVQPVQNPVISESAEEASDFPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPVIPEKTKIKIDEQCVEPANQSLQQITLPENAREEDLKAVSEENVDDNEPNAEDMEDDPDTREEQNTKETLVPDNVENPMKRVPGKRKLQIQGKWRGVDPVVFFKDETIINSIRDFYGIDERFPFNSHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTAREGSSAPCAFRISSEGLPLILPYITKQILHASPADFKHLLQNKEVKFEDFADAKFGEKAANLLPGCCVVILGTGNTVAVESLRVDESTIAIGCWRGRARLSVMVTAMDCQELLERLLIRFDNGNGSSGHVGKSSNNEEEIGAVQE 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02923 861 ProSitePatterns NOL1/NOP2/sun family signature. 329 340 IPR018314 GO:0003723|GO:0008168
Phco4g02923 861 PRINTS RNA (C5-cytosine) methyltransferase signature 380 396 IPR023267 GO:0001510
Phco4g02923 861 PRINTS RNA (C5-cytosine) methyltransferase signature 517 534 IPR023267 GO:0001510
Phco4g02923 861 PRINTS RNA (C5-cytosine) methyltransferase signature 240 250 IPR023267 GO:0001510
Phco4g02923 861 PRINTS RNA (C5-cytosine) methyltransferase signature 330 342 IPR023267 GO:0001510
Phco4g02923 861 MobiDBLite consensus disorder prediction 584 598 - -
Phco4g02923 861 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 186 207 IPR023270 GO:0016428
Phco4g02923 861 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 701 713 IPR023270 GO:0016428
Phco4g02923 861 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 414 433 IPR023270 GO:0016428
Phco4g02923 861 MobiDBLite consensus disorder prediction 560 619 - -
Phco4g02923 861 MobiDBLite consensus disorder prediction 37 97 - -
Phco4g02923 861 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 125 535 IPR001678 GO:0008168
Phco4g02923 861 MobiDBLite consensus disorder prediction 71 87 - -
Phco4g02923 861 Pfam 16S rRNA methyltransferase RsmB/F 230 413 IPR001678 GO:0008168
Phco4g02923 861 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 102 444 - -
Phco4g02923 861 Gene3D Vaccinia Virus protein VP39 104 445 IPR029063 -
Phco4g02923 861 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 535 IPR029063 -
Phco4g02923 861 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 66 838 IPR023267 GO:0001510
Phco4g02923 861 MobiDBLite consensus disorder prediction 569 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02923 Phco-Chr4 50451888 50466799 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02923 4 50451888 50466799 Phco4g02923 4 50451888 50466799 ECH
Phco4g02923 4 50451888 50466799 Phco2g02892 2 58047353 58053105 PCT