Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02892 ATGGGGAGAGGAAAAGGAGGGAAGAGTCGCACTCAAAGAAAGCATTTCCAAGAGAGCAGAGAGAATGTGTGGAACTCGAAACGTGCTAGATCAGATTCAGATCCTATTCTTTTCTCCAACCCCTTCGCTACTCAGAACCTCGCTTTCGATCACTATTACAAGGAGCAGGGAATCGTGTCATCGGAAGAATGGGATGCATTCGTGCAACTTCTCAGAACTCCTTTGCCCGCAGCATTCAGGATCAATTCCACTAGCCTGTTTTGTGCGGATATTCGGTCCCAACTAGAGAATGATTTCGCGCACTCACTTCAGGCTGAGGTTGTGGAAGGGGATGATACAGAGGCTATTTTACCTTTGCCATGGTATCCTGAGAATCTTGCTTGGCATTCGAATTTTTCGCGTAAGCAGCTCAGGAAGAATCAAACACTTGGGAGGTTTCATGAATTCTTAAAAGTAGAAAATGAAATTGGAAATATTACGAGACAGGAAGCTGTCAGCATGGTACCTCCCTTGTTTTTGGATGTACATTCAAATCATTTTGTACTTGATATGTGTGCAGCGCCTGGTTCAAAAACATTTCAATTGCTTGAGATTTTACACCATTCAACTAAAGTAGGATCTCTGCCCGATGGAATGGTTATAGCAAATGATCTAGATATCCAAAGATGTAATCTTCTCATTCACCAAACAAAACGGATGTGCACCGCCAACCTAATTGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCTCTTAAAAAAACATTATGATAAAATGGAGCTAGATCAACAAGCCCAGTTATTATTTGATCGTGTTCTGTGCGATGTCCCATGCAGCGGAGATGGCACCCTTCGTAAGGCCCCTGATCTTTGGAGGAAATGGAACACAGGGACTGGAAATGGCCTTCATAATCTACAAGTTCTAATTGCAATGCGAGGTGTATCTTTACTTAAAGTTGGTGGAAGAATGATTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCGGTTGTTGCAGAGGTTTTGCGAAGGTGTGGAGGGTCCATTGAACTTGTAGACGTCTCTAGTGAACGTCCCCAACTCACTCGTCGACCAGGTCTTAAGAGATGGAGGGTATGCGACAAGGGCAAGTGGTTTATCTCTAGCAAAGATGTTCCCAAGTTTCATAGAAATGTAGTTCTTCCCAGCATGTTTCCAAATGGCGGAAGCTATCAGGATGTTGGTGATAGTAATTGTAATATCATCATTGAAGGTGATATTAATACTGATGATGTTAAGGGACATGCTGAAGATGATGTTCAAGCAGTGGAGAATCCTGTGATGCTCGAATTTACTGAGGAAGATTCTGATTTCCCACTAGAGCGGTGCATGAGGTTTGTGCCTCATGATCAGAATACTGGAGCCTTCTTTATTGCTGTTCTGCAGAAAGTTTCTGCTCTTCCTGCAATCCAGGTAAAACCTAGAAAAGAAGTTGGGAAACAAGTTGACGCAGCAAACCAGGGCAAGGAGGATGCACAAGAACTGCATGTTAATCCATTGGAAAGTATACCTGAAAGAATTTCAGAGGCTAATATAAATGAAAATGAACCTAATAAAATAGATTTGAAAGTTAATTCTCTTACATGTGAAGAAGAGGATTTCAAGGAAGCTCAAGATCCCTGCAGTGTAGAAATCATAACAAAGAATACTCCAGGCAAAAGGAAACTGCAGTTTCAAGGCAAATGGAGAGGCATTGACCCTGTTGTCTTCTTCAAAGATGAAGGAGTTATTAACAGCATAAAGGAATTTTATGGTATTGATGATCAATTCCCATTTAATGGTCACCTTGTAACAAGAAACAGTGATACAAGTCACGTGAAAAGAATTTACTATATATCAAAGTCAGTCAAAGATGTTCTGGAGTTGAACTTCTCGGTGGGGCAGCAACTTAAATTAACTTCTGTTGGCCTGAAGGTTTTTGAAAGACAAACTTCATGTGAAGGAAGGTCTGCACAATGTTCTTTCCGGATCACTTCTGAAGGATTGCCCCTTATTCTTCCTCACATTTCCAAACAGATTCTACGTGCATCTGCCATAGATTTCAAGCATCTTCTGCAGTATAGAGCTGTAAAATTTGCAGATTTTGTCGATGCCAAGTTCGGAGAAAGTGCTGCAAACCTAATGCCCGGCTGTTGCGTGATAGTTCTGGGTGTAGGGAGCAGAGCTGCTACAGGGACCCTCCAAGTGGACGAGTCAACTGTAGCCATTGGATGCTGGAAGGGTAGAGCAAGTTTGACTGTGATGGTTGGTGCATTGGAATGCCAAGAACTGCTCCAAAGGCTTTTAATGCGTCTAGATACACTAACAGAAAAGGACAACTCCATGCATGAGGACCAACCGTCTGATACCAAGGGAGATAAAGAAGCACAAGTGGCAAACGGTAAAAATGAAGACCTGGAAGTTACTGGGTGTTAG 2460 0.4228 MGRGKGGKSRTQRKHFQESRENVWNSKRARSDSDPILFSNPFATQNLAFDHYYKEQGIVSSEEWDAFVQLLRTPLPAAFRINSTSLFCADIRSQLENDFAHSLQAEVVEGDDTEAILPLPWYPENLAWHSNFSRKQLRKNQTLGRFHEFLKVENEIGNITRQEAVSMVPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHHSTKVGSLPDGMVIANDLDIQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCLLKKHYDKMELDQQAQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGVSLLKVGGRMIYSTCSMNPIENEAVVAEVLRRCGGSIELVDVSSERPQLTRRPGLKRWRVCDKGKWFISSKDVPKFHRNVVLPSMFPNGGSYQDVGDSNCNIIIEGDINTDDVKGHAEDDVQAVENPVMLEFTEEDSDFPLERCMRFVPHDQNTGAFFIAVLQKVSALPAIQVKPRKEVGKQVDAANQGKEDAQELHVNPLESIPERISEANINENEPNKIDLKVNSLTCEEEDFKEAQDPCSVEIITKNTPGKRKLQFQGKWRGIDPVVFFKDEGVINSIKEFYGIDDQFPFNGHLVTRNSDTSHVKRIYYISKSVKDVLELNFSVGQQLKLTSVGLKVFERQTSCEGRSAQCSFRITSEGLPLILPHISKQILRASAIDFKHLLQYRAVKFADFVDAKFGESAANLMPGCCVIVLGVGSRAATGTLQVDESTVAIGCWKGRASLTVMVGALECQELLQRLLMRLDTLTEKDNSMHEDQPSDTKGDKEAQVANGKNEDLEVTGC 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02892 819 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 44 385 - -
Phco2g02892 819 Pfam 16S rRNA methyltransferase RsmB/F 172 347 IPR001678 GO:0008168
Phco2g02892 819 MobiDBLite consensus disorder prediction 1 27 - -
Phco2g02892 819 PRINTS RNA (C5-cytosine) methyltransferase signature 321 337 IPR023267 GO:0001510
Phco2g02892 819 PRINTS RNA (C5-cytosine) methyltransferase signature 461 478 IPR023267 GO:0001510
Phco2g02892 819 PRINTS RNA (C5-cytosine) methyltransferase signature 182 192 IPR023267 GO:0001510
Phco2g02892 819 PRINTS RNA (C5-cytosine) methyltransferase signature 271 283 IPR023267 GO:0001510
Phco2g02892 819 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 128 149 IPR023270 GO:0016428
Phco2g02892 819 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 645 657 IPR023270 GO:0016428
Phco2g02892 819 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 355 374 IPR023270 GO:0016428
Phco2g02892 819 Gene3D Vaccinia Virus protein VP39 45 385 IPR029063 -
Phco2g02892 819 MobiDBLite consensus disorder prediction 11 27 - -
Phco2g02892 819 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 67 479 IPR001678 GO:0008168
Phco2g02892 819 MobiDBLite consensus disorder prediction 788 819 - -
Phco2g02892 819 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 12 788 IPR023267 GO:0001510
Phco2g02892 819 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 52 479 IPR029063 -
Phco2g02892 819 MobiDBLite consensus disorder prediction 788 809 - -
Phco2g02892 819 Coils Coil 766 786 - -
Phco2g02892 819 ProSitePatterns NOL1/NOP2/sun family signature. 270 281 IPR018314 GO:0003723|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02892 Phco-Chr2 58047353 58053105 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02923 4 50451888 50466799 Phco2g02892 2 58047353 58053105 PCT