Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02898 ATGCGCCTCTTTTCGAAGAAAGCCACCACTTTGGATATTTGTAAGTATTTAACTGTGGTGGGAACATTGTTTGGTGGAACAGATGTGCTCGCAATGATGAAGTGCTTCTCCCTGTGCTTACTCTCCTTTTGGGTTCTCCTTCCTCTCTGTTTGCCGAGTGTATCATCTCAAAATATATTTGGGAGTGGCCTGCAGCAAGCTAGCCTCCCACCAAGAGGTTGGAATTCTTATGATTCCTTTTGCTGGACAATTTCTGAAGATGAATTCTTACAAAGTGCTGAAATAGTTTCTCAACGTCTCAAGGCTCATGGATATGAGTTTGTCGTGGTGGATTACCTCTGGTATAGGAAGAAAATCAAAGGTGCTTATCCCGATTCTCTTGGATTTGACGTGATTGATGAATGGGGAAGGATGCTCCCAGACCCAGGAAGGTGGCCTTCTTCCACAGGTGGGAAGGGTTTCAGTGAAGTAGCTGATAAAGTACATAGTTTGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACTCAAGCTGTCAATGCAAACACTCCTATCTTAGATACAACAAAGGGAGGTGCATATCAAGAATCTGGACGAGTGTGGCATGCAAAAGACATAGCAATCCCAGAAAGGGCTTGTGCATGGATGCCTCACGGTTTTATGAGTGTAAATACAAAGTTAGGAGCTGGGAGAGCTTTTTTGAAATCTCTTTATGCGCAGTATGCAGCATGGGGTGTTGATCTAGTGAAACATGACTGTGTGTTTGGCGATGACTTGGAACTAAATGAAATAAGCTATGTGTCAGAGGTTCTCAGTGAGCTTAATCGCCCTATTGTGTATTCTCTGTCTCCTGGAACAAGTGTGACACCAGCGATGGCCAAGGATGTCAGTGGACTAGTCAACATGTATCGAATAACAGGAGACGACTGGGATAGTTGGGGGGATGTCAGGGCTCATTTTGACGTAACAAGGGATTTTTCTAGAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCTTTTGGATGGCTAACTGATCCAGGTTCAAATGAAGGTCCACACAGGTTTAGTAGGCTCAATCTTGAAGAAAAAAGGACACAGATGACTTTGTGGTCTTTGGCGAAGTCTCCCTTTATGTATGGTGGGGATGTGCGGAAGATCGATGCTAGCACATACGAACTTATAACAAATCCTACCCTGCTTGAGATTAATTTCTTCAGCTCAAATAATAAGGAGTTTCCTTATATCACAAGCTCAAATAACTTGAAGCACCCTGAAAGACCGAAGCAAGGAACAAAGGCATCATATACACATTCATTAGGTTTGATTGGCTGTAGCGAATCAAAGGCGAGTGGTTGGTCTATTGAAAGTCATAACCAATATCTCGAAACAATCTGCTGGAAAAAGGGTGTTGAAAACCAGCACCAAGCTCCATTCTGCGTAAACAAGAGAGAACTTCAATACAGATTAGATGGTGAGAGTATGTTTCAACAGGACTATCGAGGGAAACATCAACTAATTGCTACTGACAGAATGAAATTTTGCTTAGACGCTTCTCCAAAACGAAAGGTTACTTCTAAAGAGTTCAAGAGAGGAACATTTTCTCCATGCAGATGGGATTCAAATCAGATCTGGGAACTGCACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTTGTGCAACAGTAAAGTTTGTTGAAGATGAGGTTAAGGCTGGTGGGATTCGCTCTTGGATTGCAACAGGAAGAAAAGGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGATGAGAAGACGGAGATATATGCAAAGACATCATATCTGGGGAAGGTTCTTCCTGACAGAAAGATCGATTCATGCAAGGGGACGGAAGTGTGGAGTGGAAAGGACGTAGTCACAACACAGGGGATGATATCAATGAACGTGGAAATTCATGGATGTGCACTATTTGTTCTAAATTGCAACTAG 2004 0.4266 MRLFSKKATTLDICKYLTVVGTLFGGTDVLAMMKCFSLCLLSFWVLLPLCLPSVSSQNIFGSGLQQASLPPRGWNSYDSFCWTISEDEFLQSAEIVSQRLKAHGYEFVVVDYLWYRKKIKGAYPDSLGFDVIDEWGRMLPDPGRWPSSTGGKGFSEVADKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGGAYQESGRVWHAKDIAIPERACAWMPHGFMSVNTKLGAGRAFLKSLYAQYAAWGVDLVKHDCVFGDDLELNEISYVSEVLSELNRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDSWGDVRAHFDVTRDFSRANMIGGKGLKGNSWPDLDMLPFGWLTDPGSNEGPHRFSRLNLEEKRTQMTLWSLAKSPFMYGGDVRKIDASTYELITNPTLLEINFFSSNNKEFPYITSSNNLKHPERPKQGTKASYTHSLGLIGCSESKASGWSIESHNQYLETICWKKGVENQHQAPFCVNKRELQYRLDGESMFQQDYRGKHQLIATDRMKFCLDASPKRKVTSKEFKRGTFSPCRWDSNQIWELHSNGTMVNSYSGLCATVKFVEDEVKAGGIRSWIATGRKGEIYLAFFNLSDEKTEIYAKTSYLGKVLPDRKIDSCKGTEVWSGKDVVTTQGMISMNVEIHGCALFVLNCN 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02898 667 SUPERFAMILY Glycosyl hydrolase domain 583 665 - -
Phco4g02898 667 SUPERFAMILY (Trans)glycosidases 67 415 IPR017853 -
Phco4g02898 667 CDD GH27 70 415 IPR002241 GO:0004553|GO:0005975
Phco4g02898 667 Pfam Alpha galactosidase C-terminal beta sandwich domain 585 664 IPR041233 -
Phco4g02898 667 Pfam Alpha galactosidase A 242 415 IPR002241 GO:0004553|GO:0005975
Phco4g02898 667 PRINTS Glycosyl hydrolase family 27 signature 158 179 IPR002241 GO:0004553|GO:0005975
Phco4g02898 667 PRINTS Glycosyl hydrolase family 27 signature 64 83 IPR002241 GO:0004553|GO:0005975
Phco4g02898 667 PRINTS Glycosyl hydrolase family 27 signature 373 394 IPR002241 GO:0004553|GO:0005975
Phco4g02898 667 SUPERFAMILY Ricin B-like lectins 507 576 IPR035992 -
Phco4g02898 667 Gene3D Aldolase class I 62 417 IPR013785 -
Phco4g02898 667 Gene3D - 581 666 IPR013780 -
Phco4g02898 667 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 44 666 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02898 Phco-Chr4 50154547 50159821 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02898 4 50154547 50159821 Phco4g02898 4 50154547 50159821 ECH
Phco4g02898 4 50154547 50159821 Phco2g02914 2 58173680 58180139 PCT