Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02891 ATGCTTCTAGAGCTGGAGACTTGGACTGCTTTGGCTGTTTTGTTTTTGCTTGTGTTGATTCTGAAGGAGTCGATCATGGGAAGTAAGAGTTCGAAAGTCTCTGGAAGAAGGCATGTTTCATCGTATGGATCTGGTGGTTCTTCGTCTTCATGGGATAACTATGGTGGATACCCTCAGACACCAAATGCTTATCCACAACAAAACATTTATCATACGCCTATTCATAACCGTGCCCCCACTCCATTCCACGACTACTCACAGCCAAAAAGGAGGTTGGATAGGAGATACTCCAGAATAGCTGATGATTACAATTCACTGGATGAGGTTACCAGTGCTCTTTCACACGCAGGACTGGAATCTTCTAATCTCATTGTTGGCATTGATTTTACAAAGAGCAACGAGTGGACAGGCAAGAGGTCGTTCAACCGAAAAAGCTTACATCATATAGGAAGTGATCATAATCCTTATGAACAAGCAATCTCGATTATTGGGAAAACTTTAAGTGCTTTTGACGAGGATAATTTGATTCCTTGTTTTGGTTTTGGAGATGCATCAACGCATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTCTGTCAAGATATAGAGATATTGTTCCTTGCCTGCGTCTAGCAGGACCCACTTCATTTGCTCCTATTATTGAGATGGCTATGACTATAGTTGAACAAAGTGGCGGCCAGTATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACGCAACATGGTCAGTTAAGTCCCCAAGAACAGAAGACAATTGATGCAATTGTAAAAGCCAGCGAGTATCCACTTTCAATAGTTTTGGTGGGGGTTGGAGATGGACCGTGGGAAATGATGAAGGAATTTGATGATAACATTCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACCGAAATAATGTCAAGGAGCGTAGATTCAAGAAGAAAAGAGACAGACTTTGCTCTATCAGCTTTGATGGAGATACCTGCTCAATATAAGGCAACTATAGATTCTGGCATACTGGGTGCACGGAGGGGACATTCACCGGATAGGGTTCCTCTGCCTCCACCTCATTGTGAGAGGACTTCTAACAGCAGCATATCATCTTTTCGTCCAAACAGTTCTCAGCAAAGTGCACCTACATATTCTGGCTTCGATAATGTTAACACGGCATCATCTTCAGGTGGCTTATATGATAACAAGGTTTGTCCAATTTGTCTTACTAACGGGAAGGATATGGCATTTGGTTGCGGGCATCAGACTTGTTGTGAATGTGGAGAAAGCCTCGAATTCTGCCCCATATGCCGAAGCACAATCACTACAAGAATAAAGCTTTACTAG 1392 0.4231 MLLELETWTALAVLFLLVLILKESIMGSKSSKVSGRRHVSSYGSGGSSSSWDNYGGYPQTPNAYPQQNIYHTPIHNRAPTPFHDYSQPKRRLDRRYSRIADDYNSLDEVTSALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSDHNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSRYRDIVPCLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWEMMKEFDDNIPARAFDNFQFVNFTEIMSRSVDSRRKETDFALSALMEIPAQYKATIDSGILGARRGHSPDRVPLPPPHCERTSNSSISSFRPNSSQQSAPTYSGFDNVNTASSSGGLYDNKVCPICLTNGKDMAFGCGHQTCCECGESLEFCPICRSTITTRIKLY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02891 463 PANTHER COPINE FAMILY PROTEIN 1 64 440 - -
Phco4g02891 463 MobiDBLite consensus disorder prediction 34 57 - -
Phco4g02891 463 MobiDBLite consensus disorder prediction 361 402 - -
Phco4g02891 463 Pfam Zinc finger, C3HC4 type (RING finger) 417 458 - -
Phco4g02891 463 SUPERFAMILY RING/U-box 414 459 - -
Phco4g02891 463 SUPERFAMILY vWA-like 122 304 IPR036465 -
Phco4g02891 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 463 IPR013083 -
Phco4g02891 463 SMART VWA_4 120 323 IPR002035 -
Phco4g02891 463 Pfam Copine 145 357 IPR010734 -
Phco4g02891 463 ProSiteProfiles Zinc finger RING-type profile. 420 453 IPR001841 -
Phco4g02891 463 MobiDBLite consensus disorder prediction 376 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02891 Phco-Chr4 50109234 50113437 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02891 4 50109234 50113437 Phco4g02891 4 50109234 50113437 ECH
Phco4g02891 4 50109234 50113437 Phco2g02918 2 58198595 58205562 PCT