Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02611 ATGGCCTTTGAGCACTGCGTTTCGCAGCAATGGAAAACCATCCCAAGCCCCGTGACTGTGACAGAAAATTTTGATGGGTGTTTTGATTGCAATATCTGCTTAGATTTTGCACATGAACCAATTGTTACCCTTTGTGGTCACCTATACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCTGATGAGCACCCACAATGCCCTGTTTGCAAGGAAGATATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGCCACAGCTCATAGTGACCGTGATGTGAAGGCTTCCTATAGAGGTGTTTTCATTCCACCAAGACCACCAGCTTTGGGTACTCAATCTCTCGTGCCAACATCATCTCAAAGTGGTCAGCAACTTCCATATCGTAATCCTTATCAGAGTCAGCATTTCAACCCTCCTTTATACCAAGAAGAGGATGAATCATCATCACAGATGCTTCTCAGTCCTGGTGCCATGGCACCAGGGTTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCCGAGTCTTTGGCAACTCAGAAAATGTATACACTTACCCAAATTCTTATCACCTGGCAGGAAGTAACAGCCCCAGGTTGAGAAGGCAAGAGATGCAGGTAGACAAATCACTGAATAGAATTTCAATTTTTCTCTTCTGTTGCTTCCTTCTATGTCTCATCGTCTTCTAA 723 0.4578 MAFEHCVSQQWKTIPSPVTVTENFDGCFDCNICLDFAHEPIVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKEDICHTTMVPLYGRGQATAHSDRDVKASYRGVFIPPRPPALGTQSLVPTSSQSGQQLPYRNPYQSQHFNPPLYQEEDESSSQMLLSPGAMAPGFPHLVVGMFGEMFYTRVFGNSENVYTYPNSYHLAGSNSPRLRRQEMQVDKSLNRISIFLFCCFLLCLIVF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02611 240 SMART ring_2 30 76 IPR001841 -
Phco4g02611 240 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Phco4g02611 240 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Phco4g02611 240 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
Phco4g02611 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phco4g02611 240 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Phco4g02611 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 108 IPR013083 -
Phco4g02611 240 SUPERFAMILY RING/U-box 22 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02611 Phco-Chr4 47434295 47435017 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02611 4 47434295 47435017 Phco11g00408 11 2644824 2652759 PCT