Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02571 ATGCAACGTTTGCCAGCCACGTTGTGCCGCAAACTGGCTCGTCCAGTATGCGATGTGTTCATAAACCACCGTGGCATCGACACGAAGAGGAACATTGCGGGGTTGCTCTACAACAGTTTGACTAGGATGGAAGTGCGGTCGTTTTTGGACAGCATGAACATGAAACCTGGGGACAGATTGTTCGATCACATTGACAGGGCCATTCTCGGGTCTAAAGTGGGTGTTGCGGTGTTTTCACCACGTTACTGTGAGTCGTATTTTTGTCTCCATGAGCTCGCTCTTTTCATGGAGTCAAAGAAGAGGGTTATTCCCATCTTCTACGACGTGAAACCTTCGGAGCTTGTGGTCAAAGACAACGGAACTTGTCCTGCTAAAGAGCTTCAGCGGTTCTCTTTGGCACTCGAGGAAGCTAAATACACTGTTGGATTGACCTTTGATTCTTTGAAAGGGGACTGGTCGAAGATACTGAGAGATGCTTCAGAAGCAGTGATCATGAACTTGCTGGAGGTAGAGGAAGAGCGAAAAACCATGAAGAGGAAACTGTGA 546 0.478 MQRLPATLCRKLARPVCDVFINHRGIDTKRNIAGLLYNSLTRMEVRSFLDSMNMKPGDRLFDHIDRAILGSKVGVAVFSPRYCESYFCLHELALFMESKKRVIPIFYDVKPSELVVKDNGTCPAKELQRFSLALEEAKYTVGLTFDSLKGDWSKILRDASEAVIMNLLEVEEERKTMKRKL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02571 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 138 IPR035897 -
Phco4g02571 181 SMART till_3 16 149 IPR000157 GO:0007165
Phco4g02571 181 Pfam TIR domain 18 122 IPR000157 GO:0007165
Phco4g02571 181 Gene3D - 13 175 IPR035897 -
Phco4g02571 181 ProSiteProfiles TIR domain profile. 15 160 IPR000157 GO:0007165
Phco4g02571 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 15 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02571 Phco-Chr4 47009679 47010445 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02571 4 47009679 47010445 Phco11g00376 11 2438345 2439007 PCT