Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00376 ATGCAGCGTTTACCCACCAAGTTTATCACCAAAATCGCTCGCCCAGCATGCGACGTGTTCATCAACCACCGTGGAATCGACACGAAGAGGAACGTTGCGGGGTTGTTGTACGATAATCTTACGAGGATGGGAGTGAGGTCGTTTTTGGACAGCATGAACATGAAACCTGGGGACAGGCTCTTCCACAACATTGATAGAGGCATTCTAGGTTGCAAGGTTGGTGTTGCCGTCTTCTCCCCTCGCTATTGTGACTCCTATTTCTGCCTTCACGAGCTGGCTCTTCTCATGGAGTCCAACAAAAGGGTCGTTCCCATTTTCTACGACGTCAAACCCTCGGAACTAATGGTCAAGGACAACGGAACGTGCCCTCCTGCGGACCTTCAGAGGTTCGCCTTCGCACTTGAAGAAGCAAAGAACACCGTGGGATTGACGTTTGATTCTTTGAACGGGGATTGGTCAAAGTTGCTAAGGAATGCTTCGGAAGCGGTGATCATGAACTTGTTGGAGGTAGAGGAAGAAAGGAAGCACGCGAGGAAGCAACGTTGA 546 0.5018 MQRLPTKFITKIARPACDVFINHRGIDTKRNVAGLLYDNLTRMGVRSFLDSMNMKPGDRLFHNIDRGILGCKVGVAVFSPRYCDSYFCLHELALLMESNKRVVPIFYDVKPSELMVKDNGTCPPADLQRFAFALEEAKNTVGLTFDSLNGDWSKLLRNASEAVIMNLLEVEEERKHARKQR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00376 181 ProSiteProfiles TIR domain profile. 15 160 IPR000157 GO:0007165
Phco11g00376 181 SMART till_3 16 162 IPR000157 GO:0007165
Phco11g00376 181 Gene3D - 7 139 IPR035897 -
Phco11g00376 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 13 178 - -
Phco11g00376 181 Pfam TIR domain 19 120 IPR000157 GO:0007165
Phco11g00376 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 142 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00376 Phco-Chr11 2438345 2439007 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00376 11 2438345 2439007 Phco11g00376 11 2438345 2439007 ECH
Phco4g02571 4 47009679 47010445 Phco11g00376 11 2438345 2439007 PCT