Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02480 ATGATGGATTATCAGTATATTCTAGGAGGGATCATGGTTTCTAGTTTCGCATTTTTGTATTTTGTGTACATTTTTGGAGCAAAAAAGGTCACAGATTCAAGTTTAATTCATGTAAGTAACGAGTGTGAGAAGAAATCATCAGGAAATGGAATATGTTCACACGAGGCTGCAGAAAGTGCTGAAATCATCATTGTGGGTGCTGGCGTTGCTGGTGCTGCTCTTGCTTATACGCTTGGAAAGGATGGACGCCGAGTACATGTGATTGAAAGGGATTTGAGTGAACCTGACAGGATCGTGGGTGAATTGCTACAACCTGGGGGATATTTAAAGTTAATTGAGCTGGGTCTTCAGGATTGTGTGAGTGAAATTGATGCTCAGCAAGTCTTTGGGTATGCTCTGTATAAGGATGGCAAAAATACCAAGCTCCCTTATCCCTTGGAAAAATTTAGCTCTGATGTTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGAGAGAAAAGGCCTCATCTCTTCCTAATGTAAATTTAGAACAAGGAACTGTCACATCTCTACTTGAAGAAAAAGGAACCATCACCGGGGTGCAGTACAAAACCAAAAGTGGACAAGAGTTCACAGCAAAGGCTCCCCTCACCATAGTATGTGATGGATGTTTTTCCAACTTGAGGCGTTCTCTTTGCAATCCTAAGGTTGACGTACCCTCTCATTTTGTTGGTCTGGTGTTGGAGAGTTGTGATCTTCCATATGCAAATCATGGACACGTGATCTTAGGTGATCCTTCACCAATTTTGTTTTATCCTATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTGCCTGGCCAAAAATTACCTTCCCTTGGCAATGGTGAAATGGCCAGTTATTTGAAAACTGTGGTAGCTCCTCAGGTTCCTAAAGAGCTGTATAGTTCTTTTATAGCAGCTGTTGACAAAGGAAGCATAAGAACCATGCCAAATAGAAGCATGCCTGCCTCACCTCAACCCACACCTGGCGCCCTTCTAATGGGAGATGCCTTCAATATGCGCCACCCTTTAACAGGAGGAGGAATGACTGTGGCTTTATCTGACATTGTTGTGCTAAGGAATCTACTTAAACCCCTTCGGAATCTGCATGATGCTTCTGCTCTTTGCAGATACATTGAATCATTCTACACTCTACGCAAGCCAGTGGCATCCACAATAAACACACTAGCTGGGGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGGCAAGCATGTTTTGATTACTTGAGCCTTGGAGGTGTTTTCTCTAATGGACCAATAGCTCTACTCTCTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTCCATTTCTTCGCGGTCGCTATATATGGTGTTGGCCGCTTGCTCATACCATTTCCCTCTCCCAAACGGATGTGGATTGGAGCTAGATTGATTTCAACTGCATCAGGCATAATATTCCCGATTATTAAAGCTGAAGGAGTGAGACAAATGTTCTTCCCAGCAACTGTGGCAGCATATTACCGAGCTCCTCCTGTTTATTGA 1575 0.4317 MMDYQYILGGIMVSSFAFLYFVYIFGAKKVTDSSLIHVSNECEKKSSGNGICSHEAAESAEIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLQDCVSEIDAQQVFGYALYKDGKNTKLPYPLEKFSSDVSGRSFHNGRFIQRMREKASSLPNVNLEQGTVTSLLEEKGTITGVQYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLESCDLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGEMASYLKTVVAPQVPKELYSSFIAAVDKGSIRTMPNRSMPASPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRNLHDASALCRYIESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISTASGIIFPIIKAEGVRQMFFPATVAAYYRAPPVY 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02480 524 Pfam Squalene epoxidase 210 483 IPR013698 GO:0004506|GO:0016020|GO:0050660
Phco4g02480 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Phco4g02480 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Phco4g02480 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Phco4g02480 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Phco4g02480 524 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Phco4g02480 524 Gene3D - 48 414 IPR036188 -
Phco4g02480 524 PANTHER SQUALENE MONOOXYGENASE 21 522 IPR040125 GO:0004506|GO:0016126
Phco4g02480 524 FunFam Squalene monooxygenase 2 54 434 - -
Phco4g02480 524 SUPERFAMILY FAD/NAD(P)-binding domain 61 435 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02480 Phco-Chr4 45994591 45997784 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02480 4 45994591 45997784 Phco4g02480 4 45994591 45997784 ECH
Phco4g02480 4 45994591 45997784 Phco11g00272 11 1784013 1791230 PCT