Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00272 ATGCATTGTTTCTCTCTGTCATCGCCTACACCAAGATCTGCAACTTCTGCACCACCATTTAAGAGCTGGGGGCTGCCATTACCAGCATTTCTTCAACTCTCTTTGCTAAAAGCTTTGTTCGATCTATTGAAGATGGATTTTGAATACATTTTGGGAGGAATTACAGCTTCTACTATTCTATTTGTTCTATTCAGTTCTGCATCAAAGAAGGAGGCCAAAGGTTTAGCACATGCAGAAAATAATGGAGGCACTATGATAACAACAACAACATCAGAAAATGGAAACCAACATCAAGAAATTTCACCAACCATAGACATCATCATTGTCGGTGCTGGGGTTGCTGGCGCAGCCCTTGCTTGCACACTTGGCAAGGAAGGAAGGCGAGTGCATGTTATTGAAAGGGACTTGACTGAACCAGACAGGATTGTGGGGGAATTGCTACAACCTGGAGGTTATCTCAAGCTAATTGAGTTGGATCTCCAAGATTGTGTGGGTGAGATTGATTCTCAGCAAGTCTTTGGGTATGCTCTTTACAAGGATGGAAAAAATACCAAGCTTTCGTATCCCTTGGAAAAGTTTGACTCTGATGTTTCTGGAAGAAGCTTTCACAATGGCCGATTCATACAGAGACTGCGTGAAAAGGCTTCAACTCTTCCAAATGTAAAATTAGAACAAGGGACTGTCACATCTCTGCTAGAAGAAAATGGAATCATCAAAGGGGTAAACTACAAAACCAGGAGTGGACAAGAGCTCACAGCTAAGGCTCCCCTCACTATAGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTTTGCAATCCAAAGGTTGATGTACCATCTCATTTTGTTGGTCTGGTCCTAGAGAACTGCAATCTTCCATATGCAAACCATGGGCACGTTATCTTGGGTGATCCTTCTCCCATTTTGTTTTATCCCATAAGTAGCACCGAGATTCGGTGTCTGGTTGATGTGCCTGCAGGCGAAAAATTACCTTCCCTTGGTAATGGTGACATGGCTCGTTATTTGAAAACTGTAGTAGCTCCACAGGTTCCCCCAGAGTTGCATGCTTCTTTTATAGCAGCAGTTGACAAAGGAAACATAAGAAGCATGCCAAACAGAAGCATGCCTGCATCTCCATATCCCACACCTGGTGCCCTTCTCATGGGAGACGCCTTCAACATGCGTCACCCTTTAACTGGAGGAGGAATGACTGTGGCTTTGTCTGACATTGTTTTGCTAAGGAACCTTCTTAGACCCCTCCATGATCTTCATGATGCTAATTCTCTTTGCAAATATCTTGAATCATTCTACACCCTACGCAAGCCAATGGCATCTACAATAAACACATTAGCAGGGGCATTATACAAGGTGTTTTGTGCATCCCCTGACCCAGCTAGAAAGGAAATGCGCCAAGCTTGTTTTGATTATTTAAGCCTTGGAGGTGTTTTCTCAGATGGACCAATATCTCTACTCTCAGGCCTAAATCCTCGTCCATTAAGCTTGGTTCTCCACTTCTTTGCTGTGGCTATATACGGTGTTGGTCGCTTACTCATACCATTTCCTTCTCCAAAACGCATGTGGATTGGAGCTAGATTGATTTCCGGTGCCTCTGCTATCATTTTCCCCATTATCAGGGCTGAAGGAATTAGACAAATGTTCTTCCCGGTGACTGTGCCAGCATATTACAGAACACCTCCTACCAATTTGCATGATTAA 1719 0.4346 MHCFSLSSPTPRSATSAPPFKSWGLPLPAFLQLSLLKALFDLLKMDFEYILGGITASTILFVLFSSASKKEAKGLAHAENNGGTMITTTTSENGNQHQEISPTIDIIIVGAGVAGAALACTLGKEGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELDLQDCVGEIDSQQVFGYALYKDGKNTKLSYPLEKFDSDVSGRSFHNGRFIQRLREKASTLPNVKLEQGTVTSLLEENGIIKGVNYKTRSGQELTAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPAGEKLPSLGNGDMARYLKTVVAPQVPPELHASFIAAVDKGNIRSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLRPLHDLHDANSLCKYLESFYTLRKPMASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSDGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASAIIFPIIRAEGIRQMFFPVTVPAYYRTPPTNLHD 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00272 572 FunFam Squalene monooxygenase 2 98 479 - -
Phco11g00272 572 Pfam Squalene epoxidase 254 528 IPR013698 GO:0004506|GO:0016020|GO:0050660
Phco11g00272 572 Gene3D - 91 459 IPR036188 -
Phco11g00272 572 SUPERFAMILY FAD/NAD(P)-binding domain 104 480 IPR036188 -
Phco11g00272 572 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 254 269 - -
Phco11g00272 572 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 105 127 - -
Phco11g00272 572 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 383 398 - -
Phco11g00272 572 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 398 414 - -
Phco11g00272 572 PANTHER SQUALENE MONOOXYGENASE 54 567 IPR040125 GO:0004506|GO:0016126
Phco11g00272 572 Pfam NAD(P)-binding Rossmann-like domain 108 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00272 Phco-Chr11 1784013 1791230 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00272 11 1784013 1791230 Phco11g00272 11 1784013 1791230 ECH
Phco4g02480 4 45994591 45997784 Phco11g00272 11 1784013 1791230 PCT