Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00206 ATGTCTTCTTTCGCTCTCTCTTATTCTTCCTCACCAGCCCTCTCATGCCCCCGGGCAAGCAAACACTTCAAATTGTTCAATGAAGTGCCTTCTGTCCGAATGAATTCTAAATTTCCCTCAAGCGACACTGCTTTTAGTAGAATTAATGCTACGTTGATTTCTGGAGGAGGGGGCCTACTTTCCTATCCAAATAGAAATGGCATTATGATAGATAAAAATCTGGTTGCAGATGAATCTGTTCGAATTGATGTACAATCTAATGGAACACCAGCTGTAGACACGGGGATAACAAGCAATGTTTTCTCTGTTGATGGTGATGAATTTGATCTGGACAGCCCAACAGCAGGCTTTGCTTCCATCCCTGAGGCCATTGAAGACATTCGCCAGGGAAAGATGGTAGTGGTCGTGGACGACGAAGATCGAGAAAATGAAGGAGACTTAATAATGGCAGCCCAGTTGGCAACACCCGAGGCAATGGCTTTTATTGTAAAACATGGAACTGGGATAGTTTGTGTAAGCATGAAAGAGGAAGATTTGGATAGATTGGAACTTCCTTTGATGGTAAACAGTAAGGACAATGAGGAGAAGCTTTGTACGGCATTCACTGTGACAGTGGATGCTAAACATGGTACCACCACTGGTGTGTCAGCTCATGATAGGGCAACAACAGTCAAAGCCCTTGCATCTAGAGATTCTACTCCAGGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACAGGGAAGGTGGTGTCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCTATACTTTCTGGCATGGATCCAGTGGCAGTTTTGTGTGAAATTGTAGATGACGATGGTTCCATGGCTAGACTGCCAAAACTTCGCCAGTTTGCAGAGCGTGAAAACTTGAAAATTATATCTATTGCTGACTTAATAAGATATAGAAGAAAAAGAGATAAGTTGGTGGAACGCGCTTCTGCTGCACGGATACCTACAATGTGGGGACCATTCACAGCTCACTGTTACAGGTCCCTTTTAGACGGAATTGAGCATATTGCAATGGTTAAGGGCGACATTGGAGATGGACAAGATGTGCTTGTGAGGGTACACTCTGAGTGTCTAACGGGAGACATATTTGGATCTGCCAGATGTGACTGCGGAAATCAGCTTGCACTCTCAATGCAACAGATTGAGGCTGCTGGTAGGGGTGTGCTGGTATATCTCCGAGGACACGAAGGAAGGGGTATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGATGATGGACGTGATACGGTAGAAGCCAATGAGGAGTTGGGATTGCCTGTTGACTCCAGGGAATACGGCATTGGCGCTCAGATGTTAAGGGACTTGGGTGTTAGATCTATGAAGCTGATGACCAACAATCCAGCAAAATATGTTGGCCTCAAAGGTTATGGTTTGACAATTTCGGGTAGGATCCCAATATTAACACTCATTACTTCAGAGAACAAGAGATACTTAGAGACCAAACGTGTGAAAATGGGTCACATATATGAGATGGAAATTAATGGTAATGGCAGTAAGGTTGATGATGACTCTAGTACTGTTACTGGCTTATAG 1608 0.4422 MSSFALSYSSSPALSCPRASKHFKLFNEVPSVRMNSKFPSSDTAFSRINATLISGGGGLLSYPNRNGIMIDKNLVADESVRIDVQSNGTPAVDTGITSNVFSVDGDEFDLDSPTAGFASIPEAIEDIRQGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLDRLELPLMVNSKDNEEKLCTAFTVTVDAKHGTTTGVSAHDRATTVKALASRDSTPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAILSGMDPVAVLCEIVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVERASAARIPTMWGPFTAHCYRSLLDGIEHIAMVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALSMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPILTLITSENKRYLETKRVKMGHIYEMEINGNGSKVDDDSSTVTGL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00206 535 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 116 512 IPR016299 GO:0009231
Phco11g00206 535 Hamap GTP cyclohydrolase-2 [ribA]. 320 516 IPR000926 GO:0003935|GO:0009231
Phco11g00206 535 Pfam GTP cyclohydrolase II 326 490 IPR032677 -
Phco11g00206 535 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 118 315 IPR000422 GO:0008686|GO:0009231
Phco11g00206 535 PANTHER GTP CYCLOHYDROLASE II-RELATED 116 515 - -
Phco11g00206 535 CDD GTP_cyclohydro2 321 513 IPR000926 GO:0003935|GO:0009231
Phco11g00206 535 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 115 319 IPR000422 GO:0008686|GO:0009231
Phco11g00206 535 Gene3D DHBP synthase 106 321 - -
Phco11g00206 535 SUPERFAMILY YrdC/RibB 116 318 IPR017945 -
Phco11g00206 535 Gene3D GTP cyclohydrolase II 322 493 IPR036144 -
Phco11g00206 535 SUPERFAMILY RibA-like 320 491 IPR036144 -
Phco11g00206 535 FunFam Riboflavin biosynthesis protein RibBA 322 493 - -
Phco11g00206 535 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 122 314 IPR000422 GO:0008686|GO:0009231
Phco11g00206 535 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 108 321 - -
Phco11g00206 535 NCBIfam GTP cyclohydrolase II 324 513 IPR000926 GO:0003935|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00206 Phco-Chr11 1348724 1353002 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02413 4 45322901 45327053 Phco11g00206 11 1348724 1353002 PCT