Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02037 ATGGATGTTGCTGAGGTTGAAGAAAATCTATTTACTGCAACTGATGCTAAGTTACATGGACAAATGTGCAAGACTCTTTCTATAATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCAAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCAGATTCTGTCCTCCTAAAATTTGAGAAAGCTAAATCTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGAAATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAGTTTGTGACAATAGAATTTGCACTTGATCCATCAGAAAAGCAAGTTGGCAATGATTTGATTGCATTGCTCCAACAGGGAAGAAAGTTTAATGATTCTAGTGACAGCAATGAGCTTGAATGTTTTCACCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTCCTAGAAAGGGCTCGATCAGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTCTTGCATCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCTATTGGGGACAGCGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTTTCAAAGTTCAGTTGCTTTAATTTCAAACCAAATAGTTGTAGGAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCGATATCTCTGCAACTTATGTATGATCCTGTTATTATTGCTTCTGGGCAAACGTATGAAAGAGTTTGTATAGAGAAATGGTTCAGTGATGGTCACAACAAATGTCCAAAGACCCAGCAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGCCTTGTTACTAGTTGGTGCGAACAAAATAGAGTTCCTATTCCCGAAGGCCCTCCTGAATCTCTGGACCTTAACTACTGGCAATTTTTATTATCAGAGTCTGAATCTACAAATTCAAAATCTGTAGACAGTGTCAGCTCTTGCAAGTTGAAGGGTGTTGAAGTGGTTTCTTTGGAAGAGAGTGGTATTCCAGAGGAATCTGTGCAAAAGGGGTCTGAAAGTGTGTCTGCACAAGAGGAAGACACTGAGCAGTATTTTAGCTTTCTGAAAGTTTTGACTGAGGGGAACAATTGGAGGAGGCAATGTGAAGTGGTAGAACAGTTAAGGTTGCTGCTGAGGGATGACGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTCGAAGCACTTTTGCACTTCTTGCAATCAGCTGTCCATGAAGGTAGTGTAATGGCTGTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCAGTGGATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAAAACTAGTTCTTATGGTTGTACAACTGCCCTCTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCAATGATTGGCATGAGTCAGGCTACCCAGTTCCTAATCCAGCTTCTCCAATCTGACTCTGATATTCAATGCAAGCTAGATGCTCTCCATGCTCTCTATAATCTATCTACTGTGCCCTCCAATATTCAATACCTCCTTTCATCTGGCATCATTAGTGGCTTACAATTCCTTGAAGGAGACGATGATTGCATGTGGACAGAAAGATGCATAGCTGTTTTGATAAATTTAGCTACTTCTCAAGTTGGAAGGGAGAAAATTGTATCAACTCCCGGACTTGTTAGTGCAATCGCTTCTATACTGGACACCGGTGAGCTCTTGGAACAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAGTGTTGTGACATGGTCTTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGCACCCCAAGAGGCAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAGCAGCGACGGGACCATTCACCAGTTAAGACACATCAGTGCCCACCTGAAACTAGTGATTTGTCTATGCCACCAGCTGAAATGAAACCACTATGCAAGTCAATTTCAAGAAGAAAGTCAGGGAGAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTGA 2292 0.4145 MDVAEVEENLFTATDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITADSVLLKFEKAKSALEDSLRRVEEIVPQSIGCQVQEIVNEFVTIEFALDPSEKQVGNDLIALLQQGRKFNDSSDSNELECFHQAATRLGITSSRAALAERRALKKLLERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSIGDSVPGSHCQAFDRQLSKFSCFNFKPNSCRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNKCPKTQQKLSHLCLTPNYCVKGLVTSWCEQNRVPIPEGPPESLDLNYWQFLLSESESTNSKSVDSVSSCKLKGVEVVSLEESGIPEESVQKGSESVSAQEEDTEQYFSFLKVLTEGNNWRRQCEVVEQLRLLLRDDEEARIFMGANGFVEALLHFLQSAVHEGSVMAVESGTMALFNLAVDNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGMSQATQFLIQLLQSDSDIQCKLDALHALYNLSTVPSNIQYLLSSGIISGLQFLEGDDDCMWTERCIAVLINLATSQVGREKIVSTPGLVSAIASILDTGELLEQEQAVSCLLILCNRSEECCDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDHSPVKTHQCPPETSDLSMPPAEMKPLCKSISRRKSGRAFSFFWKSKSYSVYQC 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02037 763 Pfam U-box domain 281 351 IPR003613 GO:0004842|GO:0016567
Phco4g02037 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Phco4g02037 763 SUPERFAMILY RING/U-box 280 355 - -
Phco4g02037 763 PANTHER U BOX DOMAIN-CONTAINING 21 708 - -
Phco4g02037 763 SMART arm_5 540 581 IPR000225 GO:0005515
Phco4g02037 763 SMART arm_5 455 499 IPR000225 GO:0005515
Phco4g02037 763 Coils Coil 175 195 - -
Phco4g02037 763 Coils Coil 87 107 - -
Phco4g02037 763 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Phco4g02037 763 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Phco4g02037 763 SUPERFAMILY ARM repeat 428 704 IPR016024 -
Phco4g02037 763 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Phco4g02037 763 Gene3D - 427 602 IPR011989 -
Phco4g02037 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Phco4g02037 763 Gene3D - 603 722 IPR011989 -
Phco4g02037 763 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02037 Phco-Chr4 40492806 40496382 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02037 4 40492806 40496382 Phco4g02037 4 40492806 40496382 ECH
Phco2g02964 2 58511814 58515328 Phco4g02037 4 40492806 40496382 PCT