Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02026 ATGGTTAAGTACTCAAGGGAGCCAAACAATCCCACTAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCCTGGTTAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAGGCCATTCCGTTCAGACGTTTCTGTCGTGGTGTTGGAAGGACAGCCCAAGCAAAGAGTAGACACTCTAATGGCCAAGGAAGGTGGCCTATCAAATCAGCAAAATTCATCCTTGATTTGCTTAAAAATGCCGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCGCTTTATATTTCCCATATCCAAGTCAATCAAGCGCAAAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTACATGTCATCCCCGTGCCACATAGAATTGATATTGTCGGAAAAGGAAGAACCCGTTAGGAAGGAGCCCGAGACAAATTTGACAACAAGCAAGAAGTCCCAAGCTCTACGAAGTGGTGCCTCTTCTTAG 546 0.4597 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPIKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLTTSKKSQALRSGASS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02026 181 MobiDBLite consensus disorder prediction 153 181 - -
Phco4g02026 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phco4g02026 181 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phco4g02026 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Phco4g02026 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Phco4g02026 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Phco4g02026 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Phco4g02026 181 MobiDBLite consensus disorder prediction 167 181 - -
Phco4g02026 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phco4g02026 181 FunFam 60S ribosomal protein L17 1 175 - -
Phco4g02026 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02026 Phco-Chr4 40320562 40323714 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02026 4 40320562 40323714 Phco4g02026 4 40320562 40323714 ECH
Phco2g02971 2 58552628 58557400 Phco4g02026 4 40320562 40323714 PCT