Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02971 ATGGATGGTGTTTGCTTCCTCCTTCAGCAGTTGCTCTTCCTCAACCGCGTGGAAGAAGTAGAAGAAGAAGAAGCCGCCATGGTGAAATACTCCAGAGAACCCGACAATCCTACCAAGTCCTGCAAGGCAAGAGGCGCGGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCTTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCCAAAAGGTACTTGGAGGATGTATTGGCCCACAAACAAGCCATTCCTTTCCGACGCTTCTGCCGTGGTGTTGGGAGGACAGCTCAGGCGAAGAGTAGACACTCCAATGGACAAGGACGCTGGCCCGTCAAATCAGCTAAATTCATCCTGGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGACGTAGATGCTCTTTACATTTCCCATGTCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGTACCTACCGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCCTGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCCGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGTAGTGGTGCTTCATCTTAA 624 0.4904 MDGVCFLLQQLLFLNRVEEVEEEEAAMVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02971 207 SUPERFAMILY Ribosomal protein L22 27 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Phco2g02971 207 PANTHER 60S RIBOSOMAL PROTEIN L17 27 199 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phco2g02971 207 NCBIfam 50S ribosomal protein L22 30 180 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phco2g02971 207 ProSitePatterns Ribosomal protein L22 signature. 153 177 IPR018260 GO:0003735|GO:0005840|GO:0006412
Phco2g02971 207 MobiDBLite consensus disorder prediction 180 207 - -
Phco2g02971 207 Gene3D Ribosomal protein L22/L17 27 206 IPR036394 GO:0003735|GO:0005840|GO:0006412
Phco2g02971 207 FunFam 60S ribosomal protein L17 27 201 - -
Phco2g02971 207 CDD Ribosomal_L22 41 177 IPR001063 GO:0003735|GO:0005840|GO:0006412
Phco2g02971 207 Hamap 50S ribosomal protein L22 [rplV]. 26 180 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phco2g02971 207 Pfam Ribosomal protein L22p/L17e 43 178 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02971 Phco-Chr2 58552628 58557400 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02971 2 58552628 58557400 Phco4g02026 4 40320562 40323714 PCT