Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02017 ATGCAGGACGAGGGTGCGGATCTGGGTCAACCAAGTTTGACCAGCATAAACGACAACATTAGGGCTGTTTCAGTTTGGAGATTCATAACATCACATCGCATTACCCTCCTATATATAACTTGCTACCTTAGGTTTTCTTCCTCTTTATCTCTCAAGGGAGAGACAGTAAAAAAAGAAGAGAAGAAGGACATGAGAACAAGGAGAGGAGCCTGTTATCCTGGAGTAGTGTCAAGGATGTGTTCCGATGTCAGGCTTGCCAATAAAAACAAGGATCTGCACATGCATATGCGTATGCATGTTGCGGGAGACTCCTTTATTTATAGCCGGAAAAGGCAGAAGAAGACGCCGGAAAAAGCCGTTACCGATTACGATTTTTTTGAGTCTTTACCGGATGACCTTGTAATCTCTATCTTCTGCAAGCTTAGTTCTACGGCCACTAAACCTTCCGATTTTCTCAATGTTTTAATCACGTGTAGGAGATTAAACAAGTTAGCACTCCATTCCCTTGTTTTGTCCAAAGTCTCTCCCAGAGCTTTCGCTATTAGAGCCAAAGATTGGTGCGATTCAGCGCACCGTTTCCTCAAGCACTGTGCGGATGCCGGAAATGTTGAAGCCTGTTACACTTTAGGCATGATTCGGTTTTACTGTCTGCAAAACCGAGGGAGCGGCGCGTCGTTAATGGCGAAGGCAGCGATAAACTCTCACGCGCGTTCTCTGTACTCGCTCGCCGTGATTCAGTTCAACGGCAGCGGTGGAACCAAAAGCGACAAGGACTTACGCGCCGGCGTTGCGCTCTGTGCCAGAGCGGCGTTCCTCGGCCATGTCGACGCGCTGCGCGAGCTCGGTCACTGCCTGCAAGACGGTTACGGCGTGCGGCAGAACATCGCCGAGGGGCGGCGGTTTCTCGTGCAGGCCAACGCACGGGAGCTCGCGGCCGTATTGTCCACGAGCGCCGCCGCGCGCCACTGGCTGACGTGCAACCTTCAGCCACAGCTTCGGCAAGGGATCGGATGTCCGTTGCTCAGCGATTTCGGATGTAACGTGCCGACGCCGGAGGTTCATCCGGCGAGCCGGTTCATGGCGGAGTGGTTCGCCTCTCGCGGCGGTTCACCTGGACAGGGGCTGAGGTTGTGTTCGCACGCGGGGTGCGGGAGACCCGAGTCGAGGAAGCACGAGTTTCGAAGGTGCTCTGTGTGTGGCGCGGTGAACTATTGCTCACGCGCGTGCCAAGCACTCGATTGGAAGTTCCGGCACAAGGCGGAGTGCGCCCCCGTGGAGCGGTGGCTCGATGAAGACGGAGAAGACGGTGGAGACGAGGATAGTGACGGCGAGGTTATGGCTATGGCGGATAGTTAG 1356 0.542 MQDEGADLGQPSLTSINDNIRAVSVWRFITSHRITLLYITCYLRFSSSLSLKGETVKKEEKKDMRTRRGACYPGVVSRMCSDVRLANKNKDLHMHMRMHVAGDSFIYSRKRQKKTPEKAVTDYDFFESLPDDLVISIFCKLSSTATKPSDFLNVLITCRRLNKLALHSLVLSKVSPRAFAIRAKDWCDSAHRFLKHCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAINSHARSLYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSTSAAARHWLTCNLQPQLRQGIGCPLLSDFGCNVPTPEVHPASRFMAEWFASRGGSPGQGLRLCSHAGCGRPESRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECAPVERWLDEDGEDGGDEDSDGEVMAMADS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02017 451 FunFam Predicted protein 370 427 - -
Phco4g02017 451 SUPERFAMILY HCP-like 182 306 - -
Phco4g02017 451 Gene3D Tetratricopeptide repeat domain 170 325 IPR011990 GO:0005515
Phco4g02017 451 MobiDBLite consensus disorder prediction 431 451 - -
Phco4g02017 451 SUPERFAMILY HIT/MYND zinc finger-like 377 427 - -
Phco4g02017 451 Gene3D - 370 426 - -
Phco4g02017 451 ProSiteProfiles Zinc finger MYND-type profile. 380 422 IPR002893 -
Phco4g02017 451 PANTHER MYND DOMAIN-CONTAINING 100 437 IPR044508 -
Phco4g02017 451 Pfam MYND finger 382 422 IPR002893 -
Phco4g02017 451 CDD F-box_SF 127 165 - -
Phco4g02017 451 MobiDBLite consensus disorder prediction 429 451 - -
Phco4g02017 451 SUPERFAMILY F-box domain 113 182 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02017 Phco-Chr4 40088261 40089961 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02017 4 40088261 40089961 Phco4g02017 4 40088261 40089961 ECH
Phco2g02980 2 58601727 58602993 Phco4g02017 4 40088261 40089961 PCT