Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02013 ATGGAAGAAGATGAAGAGGGGCATGCCATGCTCATCACTCACCTTCACCATCACCATTTCTCTCACACTTTCTCACCTTCTTTTACCCTTCAACCTCACCATAACACTCACCCTACACTCTCTCAACAACACCCCAGATGGTCCTTCTATGACATTGATGATTACTCCGTAGATGATTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTTCAGGATGATGGAGCCTCTAAAGCATGCATCTAAGAAGTCTCGGAGAGACAGGAGCAGAGGAAAATCATCTGGAAGGTCCTCCAGCAATGAAGCTATGGAACAACAAATTTGGAAAGATTTGCCGGAGGATCTATTTGAGCCTGTGATTGCGAGACTTCCAATTGCAACATTTTTCCGCTTCCGCACTGTATGCCAGCGATGGAATTCCTTGCTGAATTCTCAAAGTTTTTCTCAGCATTGTGCTCAAGTCCCACAAGCGTACCCATGGTTTTACACTGTTACTCATGAACATACTAATTCTGGAGCCATGTATGACCCTTCTATGAAGAAGTGGTACCATCCCAATACATCAGCACTGCCTGCAGAGTTGATAGTTTTACCAGTGGCTTCTGCTGGGGGCTTAGTTTGCTTTCTTGACGTATATAGTCAAAATTTATATGTTTGTAACCCATTGACTCAATCCTTAAAGGATTTACCAGCTTGTTCAGTTAGGGTTGGGTCTCGCACTGCTGTAGGGATGTCAGTAAATGAGAACCCAACTGGTGCTGTCTACAGGATCCTATTGGTGGGTTGTGATGGAGAATATGAAATTTATGACTCGGTAACAAAGTCCTGGAGCTATCCAGGAAACATGCCTGCTGATATTAAGCTGCCGCTGACACTCAATTTTAGGTCACAAGCCATTTCCATTGACAGCACCCTGTACTTCATGCATTCAGATCCTGATGGGATTGTTTCCTATAATATGGCAACTGGGGTTTGGCTGCAGTACATAATCCCAGCGCCATTGCATCTTACTGACCACACACTGGCTGAGTGTGATGGTCGGATATTGCTTGTGGGGTTGCTCACGAAGAATGCAGCCACATGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGGCTTGCTCATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACATACAACATAGCAAGTAAGGAATGGGTGAAGGTTCCTGGGTGTGTGGTGCCACATGGAAGAAAACGGCAATGGATAGCACATGGTACTGCATTTTATCCATGCCTCACTGCAACGGCTTGA 1380 0.4486 MEEDEEGHAMLITHLHHHHFSHTFSPSFTLQPHHNTHPTLSQQHPRWSFYDIDDYSVDDFCGLVMAAGKSGSFRMMEPLKHASKKSRRDRSRGKSSGRSSSNEAMEQQIWKDLPEDLFEPVIARLPIATFFRFRTVCQRWNSLLNSQSFSQHCAQVPQAYPWFYTVTHEHTNSGAMYDPSMKKWYHPNTSALPAELIVLPVASAGGLVCFLDVYSQNLYVCNPLTQSLKDLPACSVRVGSRTAVGMSVNENPTGAVYRILLVGCDGEYEIYDSVTKSWSYPGNMPADIKLPLTLNFRSQAISIDSTLYFMHSDPDGIVSYNMATGVWLQYIIPAPLHLTDHTLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASKEWVKVPGCVVPHGRKRQWIAHGTAFYPCLTATA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02013 459 SMART fbox_2 113 153 IPR001810 GO:0005515
Phco4g02013 459 FunFam F-box only protein 6 160 446 - -
Phco4g02013 459 SUPERFAMILY F-box domain 103 186 IPR036047 GO:0005515
Phco4g02013 459 Pfam F-box domain 110 149 IPR001810 GO:0005515
Phco4g02013 459 CDD F-box_AtFBW1-like 112 149 - -
Phco4g02013 459 Gene3D - 110 149 - -
Phco4g02013 459 SUPERFAMILY Galactose oxidase, central domain 174 440 IPR011043 -
Phco4g02013 459 ProSiteProfiles F-box domain profile. 107 152 IPR001810 GO:0005515
Phco4g02013 459 FunFam F-box only protein 6 110 149 - -
Phco4g02013 459 Gene3D - 163 446 IPR015915 GO:0005515
Phco4g02013 459 PANTHER BNACNNG10540D PROTEIN 81 443 - -
Phco4g02013 459 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02013 Phco-Chr4 39995435 39998398 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02013 4 39995435 39998398 Phco4g02013 4 39995435 39998398 ECH
Phco2g02989 2 58663996 58667806 Phco4g02013 4 39995435 39998398 PCT