Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco4g01552 | ATGCCGTCTCACGCGGATCTGGACCGGCAGATCGAGCACCTCATGGAGTGCAAGCCTCTGCCGGAGGCCGAGGTCAAGGCGCTTTGCGATCAGGCCAGGGCAATTCTCGTCGAAGAGTGGAACGTTCAACCGGTGAAGTGTCCCGTCACCGTCTGCGGCGACATTCACGGCCAGTTTTACGATCTCATCGAGCTTTTTCGGATAGGAGGAAACGCTCCCGATACCAACTACCTTTTTATGGGCGATTATGTAGATCGTGGCTACTATTCAGTGGAGACTGTTACACTTTTGGTGGCCTTGAAAGTCCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCACGAGAGTCGTCAAATCACTCAAGTGTATGGCTTCTACGATGAATGTTTGAGAAAATATGGAAATGCTAATGTCTGGAAATTCTTTACCGACTTGTTTGATTATTTGCCTTTGACTGCCCTCATTGAGAGTCAGATTTTCTGCTTGCATGGAGGTCTCTCACCATCTTTGGATACACTGGATAATATCCGGGCGTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTATTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCAGGATATACATTTGGACAGGACATAGCTTCTCAGTTCAATCATACCAATGGTCTATCCCTGATATCTAGAGCTCACCAGCTAGTCATGGAAGGATACAATTGGTGCCAGGACAAGAATGTGGTGACTGTTTTTAGTGCACCTAATTATTGTTACCGATGTGGGAACATGGCTGCCATACTGGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCCAGACAAATTGAGCCTGACACTACACGAAAGACTCCAGATTATTTTTTGTAA | 921 | 0.4647 | MPSHADLDRQIEHLMECKPLPEAEVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco4g01552 | 306 | ProSitePatterns | Serine/threonine specific protein phosphatases signature. | 111 | 116 | IPR006186 | GO:0016787 | |
| Phco4g01552 | 306 | SMART | pp2a_7 | 20 | 290 | IPR006186 | GO:0016787 | |
| Phco4g01552 | 306 | FunFam | Serine/threonine-protein phosphatase | 1 | 306 | - | - | |
| Phco4g01552 | 306 | CDD | MPP_PP2A_PP4_PP6 | 6 | 290 | - | - | |
| Phco4g01552 | 306 | Pfam | Calcineurin-like phosphoesterase | 48 | 239 | IPR004843 | GO:0016787 | |
| Phco4g01552 | 306 | PRINTS | Serine/threonine phosphatase family signature | 230 | 250 | IPR006186 | GO:0016787 | |
| Phco4g01552 | 306 | PRINTS | Serine/threonine phosphatase family signature | 174 | 201 | IPR006186 | GO:0016787 | |
| Phco4g01552 | 306 | PRINTS | Serine/threonine phosphatase family signature | 48 | 75 | IPR006186 | GO:0016787 | |
| Phco4g01552 | 306 | PRINTS | Serine/threonine phosphatase family signature | 252 | 268 | IPR006186 | GO:0016787 | |
| Phco4g01552 | 306 | PRINTS | Serine/threonine phosphatase family signature | 145 | 171 | IPR006186 | GO:0016787 | |
| Phco4g01552 | 306 | PRINTS | Serine/threonine phosphatase family signature | 110 | 134 | IPR006186 | GO:0016787 | |
| Phco4g01552 | 306 | PRINTS | Serine/threonine phosphatase family signature | 77 | 104 | IPR006186 | GO:0016787 | |
| Phco4g01552 | 306 | SUPERFAMILY | Metallo-dependent phosphatases | 6 | 293 | IPR029052 | - | |
| Phco4g01552 | 306 | PANTHER | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED | 5 | 306 | IPR047129 | GO:0004722 | |
| Phco4g01552 | 306 | Gene3D | - | 2 | 306 | IPR029052 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco4g01552 | Phco-Chr4 | 14583186 | 14586652 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco4g01552 | 4 | 14583186 | 14586652 | Phco4g01552 | 4 | 14583186 | 14586652 | ECH | |
| Phco4g01552 | 4 | 14583186 | 14586652 | Phco8g02620 | 8 | 38082892 | 38089992 | PCT |