Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01462 ATGGCATCAAGATCATATGCTAACCTACTAGACTTAGCTGGAGATTTACTTGATATTCCTCATACACCAAGAACTATTCCAAGGATTATGACAGTTCCTGGAGTTATTTCTGACCTGGATGGTTCTGGTAGATATGATGGGGATTCCGATGTTAGTTCTTCTGGTTACCGGGAGAGGAAAATCCTTGTGGCAAACATGTTGCCATTACAAGCTAAGAGAGATATAGACACTGGTAAATGGTGTTTCAGTTTGGATGAGGATTCAATTCTGTTACAATTAAAAGATGGTCTTTCTTCTGATACTGAGGTGATTTATGTGGGATCCCTCAAGGTTGAAATAGATGCCCACGAGCAGGAAGTAGTGGCTCAGAAGTTACTGGAGGATTTTAATTGCATACCTACCTTTTTACCCCATGATCTCATGAAAAACTTTTATCTTGGCTTTTGCAAACAGCAGCTTTGGCCTCTCTTTCATTACATGCTACCTATGTTCCCTGATCATGGTGAGCGGTTTGACCGCACACTTTGGAAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTTATGGAAATAATCAATCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTGATGGTTTTGCCTACATTCCTGAGGAAGCAGTATAATCGTGTTAAACTTGGATTCTTTCTTCACAGTCCTTTCCCTTCATCTGAAATTTACCGAACTTTGCCAGTAAGGGATGAAATTCTGAGGGGACTTTTGAATACTGATTTAATTGGTTTCCACACATTTGATTACGCTCGCCACTTTCTCTCTTGTTGCAAAAGAATGCTAGGTCTTGACTATGAATCTAAGCGAGGACATATAGGACTTGATTACTTCGGCCGTACTATATTTATCAAAATTTTGCCTGTAGGCATTCATATGGGTAGGCTTGAATCTGTATTAAATCTCCAATCTACAACGGCTAAACTGAAAGAGATTCAGGAAGAGTTTAAGGGTAGGAAGGTGATTCTTGGTGTTGATGACATGGATATATTTAAGGGCATCAGTCTGAAGCTTCTAGCTGTTGAGCAGCTGCTGGAACAGAATCAAGATTTGAAGGGCAAAGTTGTCCTGATACAAATTGTGAATCCTGCTAGGAGTTCGGGCAAGGGTGTTCAGGAAGCAAAAAGGGAAACATATTCGATTGCCCAGAGGATTAATGATACGTATGGCTCAAACCATTACCAGCCAGTTATTCTCATTGACCGTCCTGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGTAGCAGAATGTTGTATTGTTAATGCTGTGAGGGATGGTATGAACTTAGTCCCGTACAAGTATATTGTCTGCAGACAAGGAACTGCACAGATGGATAAAGCTTTGAGTAGAAAAAGTGATTCTCCCCGTACGAGCACGATAGTTGTGTCTGAGTTCATCGGTTGTTCTCCTTCTCTAAGTGGAGCAATCAGGGTCAATCCCTGGAACATAAATTCTGTGGCTGATGCTCTGTATTCAGCTGTTACTATGCATGATTCAGAGAAGCAATTGAGGCATGAGAAACACTACAGGTACATCAGTTCTCATGATGTGGCATATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCATGCAAAGATCATTACACCAAAAGGTGCTGGGGAATGGGTTTGGGCCTTGGGTTTAGAGTTGTTTCTCTTTCTCCTGGTTTTAGAAAATTGTCTGTCGATCACATTGTTTCAGCATACAAAAGAACCGGTAAAAGAGCTATATTTCTTGATTATGATGGTACTATCGTATCAAAATCTTCTATAAACAAAACCCCCAGCCCTGAAGCCATATCCGTGCTAAATGATATGTGTAATGATCCTAAAAATACCGTCTTCATTGTGAGTGGAAGGGCAAGAGATTCTTTAAGTAATTGGCTTACTTCATGCAAAATGATTGGACTTGCTGCCGAACATGGATACTTTCTAAGGTGGAATAAAGATTCTGAGTGGGAAACCAGTCAGTTGTCTTCTGATTTTGATTGGAAGAAGATTGTTGAACCTGTCATGAAATTGTATACGGAGGCAACTGATGGATCTTATATTGAAACTAAGGAAAGTGCTTTGGTGTGGCACCATCAAGATGCGGACCCTGATTTTGGCTCCTGCCAGGCCAAAGAATTGTTAAATCATCTGGAAAGTGTCCTTGCCAATGAACCTGCAGTTGTCACCCGGGGCCAGCATATTGTTGAAGTCAAGCCACAGGGGTTAAACAAGGGATTGGTAGCTGAAAAGATTCTTTCCACTATGGTTAATAGTGGTAATGCGCCAGATTTTGTGATGTGCGTGGGAGATGACATTTCCGATGAAGACATGTTTGAGAGCATATTAAGGACAGTTTCATGCCCATCATTGCCAGTAGTTCCAGAGATATTTGCTTGCACTGTTGGCCAGAAACCCAGCAAGGCCAAATATTATCTGGATGATTCTGCTGATGTGATGAAGCTGCTTCAAGGCCTGGGTGGTTCATCTAAACCAAAGCCCAGGCATCTAGCACAATTCCAAGTTTCCTTTGAGAGCACGGTTTGA 2583 0.4139 MASRSYANLLDLAGDLLDIPHTPRTIPRIMTVPGVISDLDGSGRYDGDSDVSSSGYRERKILVANMLPLQAKRDIDTGKWCFSLDEDSILLQLKDGLSSDTEVIYVGSLKVEIDAHEQEVVAQKLLEDFNCIPTFLPHDLMKNFYLGFCKQQLWPLFHYMLPMFPDHGERFDRTLWKAYVSANKIFADKVMEIINPDDDFVWVHDYHLMVLPTFLRKQYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNTDLIGFHTFDYARHFLSCCKRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLQSTTAKLKEIQEEFKGRKVILGVDDMDIFKGISLKLLAVEQLLEQNQDLKGKVVLIQIVNPARSSGKGVQEAKRETYSIAQRINDTYGSNHYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQMDKALSRKSDSPRTSTIVVSEFIGCSPSLSGAIRVNPWNINSVADALYSAVTMHDSEKQLRHEKHYRYISSHDVAYWARSFMQDLERACKDHYTKRCWGMGLGLGFRVVSLSPGFRKLSVDHIVSAYKRTGKRAIFLDYDGTIVSKSSINKTPSPEAISVLNDMCNDPKNTVFIVSGRARDSLSNWLTSCKMIGLAAEHGYFLRWNKDSEWETSQLSSDFDWKKIVEPVMKLYTEATDGSYIETKESALVWHHQDADPDFGSCQAKELLNHLESVLANEPAVVTRGQHIVEVKPQGLNKGLVAEKILSTMVNSGNAPDFVMCVGDDISDEDMFESILRTVSCPSLPVVPEIFACTVGQKPSKAKYYLDDSADVMKLLQGLGGSSKPKPRHLAQFQVSFESTV 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01462 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Phco4g01462 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Phco4g01462 860 NCBIfam trehalose-phosphatase 590 837 IPR003337 GO:0003824|GO:0005992
Phco4g01462 860 CDD HAD_TPP 592 833 - -
Phco4g01462 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
Phco4g01462 860 Gene3D - 720 849 IPR023214 -
Phco4g01462 860 Gene3D - 590 709 IPR023214 -
Phco4g01462 860 Gene3D Glycogen Phosphorylase B; 313 528 - -
Phco4g01462 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Phco4g01462 860 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0003824|GO:0005992
Phco4g01462 860 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Phco4g01462 860 Gene3D Glycogen Phosphorylase B; 53 312 - -
Phco4g01462 860 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Phco4g01462 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Phco4g01462 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
Phco4g01462 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 838 IPR001830 GO:0003824|GO:0005992
Phco4g01462 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01462 Phco-Chr4 13108197 13110946 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01462 4 13108197 13110946 Phco4g01462 4 13108197 13110946 ECH
Phco4g01462 4 13108197 13110946 Phco8g02856 8 42033788 42037061 PCT