Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01292 ATGTACAGAGAGCGAGGAGTGGGATCCAAATCGGAGGTAACTTCCGCTGATCGGAAGCGAATCAACGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACATCCAGAGCCGCAGCCATCAACGGCAAGGACCGCTCGTCCTCCTCTTCCCTCTTAGCCGCCGCCAAGGACTCCCGCTCCGCCTCCGTCACCGCCCCTATCTCCAAGAATTCCAACGCTTCCGACGAAGAGTCTGAAACAGACAGCGAGGAGTCTGATGTTAGCGGTTCCGATGGAGATGACACGTCTTGGATCTCGTGGTTCTGCAATTTGAGAGGAAATGAGTTCTTCTGCGAGGTTGATGACGATTACATCCAGGACGACTTCAACCTATGCGGATTAAGCAGCCAAGTGCCTTACTATGATTATGCTCTGGATTTAATTTTGGATGTTGAATCCTCCCATGGTGACATGTTTACCGAGGAACAAAATGAGTTAATTGAATCAGCAGCCGAGATGCTTTATGGTCTGATTCATGCCCGGTACATATTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCTAGATCCAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGACGGAGCTTATTTTGGAACTACATTTCCTCATCTGTTCCTCATGACTTATGGACAACTAAAACCACAGAAACCATCACAGAGCTATGTTCCAAGAGTTTTTGGCTTCAAACTTCACAAGCCTTGA 858 0.4767 MYRERGVGSKSEVTSADRKRINDVLDKQLERSSPSTSRAAAINGKDRSSSSSLLAAAKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01292 285 SUPERFAMILY Casein kinase II beta subunit 96 284 IPR035991 GO:0005956|GO:0019887
Phco4g01292 285 MobiDBLite consensus disorder prediction 1 27 - -
Phco4g01292 285 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 91 195 IPR016149 GO:0005956|GO:0019887
Phco4g01292 285 MobiDBLite consensus disorder prediction 28 75 - -
Phco4g01292 285 PRINTS Casein kinase II regulatory subunit family signature 115 129 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 PRINTS Casein kinase II regulatory subunit family signature 170 191 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 PRINTS Casein kinase II regulatory subunit family signature 195 216 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 PRINTS Casein kinase II regulatory subunit family signature 217 238 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 PRINTS Casein kinase II regulatory subunit family signature 98 114 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 PRINTS Casein kinase II regulatory subunit family signature 245 262 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 ProSitePatterns Casein kinase II regulatory subunit signature. 199 230 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 PANTHER CASEIN KINASE II SUBUNIT BETA 77 284 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 SMART CK_II_beta_2 98 281 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 Gene3D - 196 270 - -
Phco4g01292 285 FunFam Casein kinase II subunit beta 91 195 - -
Phco4g01292 285 Pfam Casein kinase II regulatory subunit 98 281 IPR000704 GO:0005956|GO:0019887
Phco4g01292 285 MobiDBLite consensus disorder prediction 1 94 - -
Phco4g01292 285 FunFam Casein kinase II subunit beta 196 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01292 Phco-Chr4 11086260 11088868 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01292 4 11086260 11088868 Phco4g01292 4 11086260 11088868 ECH
Phco4g01292 4 11086260 11088868 Phco8g00844 8 8591111 8593312 PCT
Phco8g00841 8 8572095 8576756 Phco4g01292 4 11086260 11088868 PCT