Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01031 ATGCCTCCCTCGTACTGCGTGAAGGAGATTAAACCCTGCGTGGGTTGGGTTCAGCATTACTTCCACGATTGTCTCTGCGATCTTAAAGATGAAATCTCCTTTGCCTTGGGCTTCACTAGTCTCATATGCTGGGGAGTAGCAGAAATTCCTCAGATTATCACCAACTTTCGCGCTAAGTCTAGCCATGGTGTCTCTCTAGCCTTTCTCCTCACTTGGGTCGCTGGCGACATATTCAATCTGGTTGGTTGTGTTATGGAGCCTGCCACGTTGCCTACTCAGTACTACACAGCTCTGCTTTATACAATAACTACGATCGTGCTAGTACTTCAAACTCTCTATTATGACTACATCTATAAATGGGGCAAGCGTCATCGAAAGATCAGCATGGATGAGGCCCAGGAAGAAGAGAAAAAACCTTTGAGACCCAAACCAGGGCCTCAACCTGGGATTGCAATACCAAATGACGAACCCAAAGCAACCCCACGACGGGAATACTACTACAGGTCAGCGAGATCTCTGGCTGCTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATGGAAATGAACAATGATTCATCCTCTGATGATGAGCCACCTCAACTTTCTTCCACTAAGCCTGTGACACAGCCTAGACCCATCCCTCGATCTGTCCCTGCAAGCTATGGAACATTTCTTGCAGCATCTATGAACTTGCCCCGGCAGGGTAATGCTTTGAAGGAGGGATACATGAGATTCAATGGAAGAAAGCTACTCGTGCAGGAGCAAAACATGCACAGTGCCTTGGGTCAATGGTTAGGATGGTTCATGGCTGTTATCTATATGGGTGGCCGGCTCCCTCAAATATGGTTGAATATTAAACGAGGGAGTGTGGAGGGCTTAAATCCTCTGATGTTCCTCTTTGCATTGATCGCGAATGCCACTTACGTTGGAAGTATTCTTGTAAGAACTACCGAATGGGAAAGCATCAGAGCAAATATGCCATGGCTGTTGGATGCCATAGGTTGCGTCGCATTGGACCTATTTATAATTTTGCAGTACGCCAACTATAGATACATTCGAAAGAAAGCAAGAAGTGATGATGGTGATTACGGGAACTACAAGGAAGCCAGCAAAACTTTTGTGTCTTGA 1155 0.4615 MPPSYCVKEIKPCVGWVQHYFHDCLCDLKDEISFALGFTSLICWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLVGCVMEPATLPTQYYTALLYTITTIVLVLQTLYYDYIYKWGKRHRKISMDEAQEEEKKPLRPKPGPQPGIAIPNDEPKATPRREYYYRSARSLAANDTPPFGTYLRAAKSVPSAMEMNNDSSSDDEPPQLSSTKPVTQPRPIPRSVPASYGTFLAASMNLPRQGNALKEGYMRFNGRKLLVQEQNMHSALGQWLGWFMAVIYMGGRLPQIWLNIKRGSVEGLNPLMFLFALIANATYVGSILVRTTEWESIRANMPWLLDAIGCVALDLFIILQYANYRYIRKKARSDDGDYGNYKEASKTFVS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01031 384 MobiDBLite consensus disorder prediction 131 158 - -
Phco4g01031 384 FunFam PQ-loop repeat family protein / transmembrane family protein 32 128 - -
Phco4g01031 384 MobiDBLite consensus disorder prediction 194 219 - -
Phco4g01031 384 Pfam PQ loop repeat 270 328 IPR006603 -
Phco4g01031 384 Pfam PQ loop repeat 32 88 IPR006603 -
Phco4g01031 384 FunFam Vacuolar membrane PQ loop repeat protein 270 368 - -
Phco4g01031 384 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 5 365 - -
Phco4g01031 384 SMART ctns 46 77 IPR006603 -
Phco4g01031 384 SMART ctns 284 315 IPR006603 -
Phco4g01031 384 MobiDBLite consensus disorder prediction 193 223 - -
Phco4g01031 384 Gene3D - 271 372 - -
Phco4g01031 384 Gene3D - 33 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01031 Phco-Chr4 8173360 8176729 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01031 4 8173360 8176729 Phco4g01031 4 8173360 8176729 ECH
Phco4g01031 4 8173360 8176729 Phco8g00510 8 5011210 5015055 PCT