Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01023 ATGGTTTCTCCTAACGTTTGTCTTAATTCCTCCATGCTCGTCACACCTTCACCTCTCTTTCTCACTCCCCTTTTCCACACTCTCACAGTGCTTCCCAATACCATCAAACCACCAACGCCAAAACTATCCTCTTCTTCTTTTCACTCTCTCTCAGTCTCTGCTGTGCCCACTAAGGTAGACACCACTGTGAGAATCGCGGAAATCGAAGATCTCCCGAACTTCGATTTCAAAGTCTACATGCTCCACAAGGCCCACACAGTGAACAAAGCCTTGGACGCAGCCATTGCGCTGCGCGACCCGGAGAAGATCCACAAAGCCATGCGCTACTCCCTCCTCGCCGGCGGCAAGAGGGTCCGCCCTATCCTCTGCATCGCTGCCTGCGAGCTCGTCGGTGGCGACGAGGCCACCGCCATCCCCGCCGCCTGCGCGGTCGAGATGATCCATACCATGTCTCTCATCCACGACGATCTGCCCTGCATGGACAACGACGACCTCCGCCGCGGCAAACCCACCAACCACAAGGTCTTCGGCGAGGATGTGGCGGTCCTTGCTGGCGACGCGCTGCTCGCGTTCGCGTTCGAGCATGTGGCGATGGCGACTGAGGGCGTGTCCCCGACGCGCGTGGTTCGCGCGATTGGGGAGCTGGCGAAATCGATCGGTGGGGAAGGCCTTGTGGCGGGACAGGTGGTGGATTTAGATTCGGAGGGGGCCTCAAATGTGGGGTTGGAGAGGTTGGAATTCATTCATGTGCACAAAACGGCGGTGTTGCTGGAAGCTGCGGTTGTGTTGGGCGCAATAATGGGAGGTGGGTCGGACGAGGAGGTTGAGAAATTAAGGAAGTTCGCTAGGTGCATTGGATTGCTGTTTCAGGTCGTTGATGACATTCTGGATGTAACTAAGACGTCGGAGGAATTGGGGAAGACGGCGGGGAAGGACTTGGTGGCTGATAAGGTCACGTACCCTAAACTTTTAGGGATACATGAGTCTAAGGAGTTTGCTGAAAAACTGCTGCAGGAAGCCAAGGAACAATTGTTTGGGTTTGATCCCCGAAAGGCAGCTCCGCTATTTGCTTTAACCAATTACATTGCTTACAGGCAAAGTTAA 1104 0.5489 MVSPNVCLNSSMLVTPSPLFLTPLFHTLTVLPNTIKPPTPKLSSSSFHSLSVSAVPTKVDTTVRIAEIEDLPNFDFKVYMLHKAHTVNKALDAAIALRDPEKIHKAMRYSLLAGGKRVRPILCIAACELVGGDEATAIPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHVAMATEGVSPTRVVRAIGELAKSIGGEGLVAGQVVDLDSEGASNVGLERLEFIHVHKTAVLLEAAVVLGAIMGGGSDEEVEKLRKFARCIGLLFQVVDDILDVTKTSEELGKTAGKDLVADKVTYPKLLGIHESKEFAEKLLQEAKEQLFGFDPRKAAPLFALTNYIAYRQS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01023 367 Pfam Polyprenyl synthetase 101 338 IPR000092 GO:0008299
Phco4g01023 367 CDD Trans_IPPS_HT 99 365 IPR000092 GO:0008299
Phco4g01023 367 SUPERFAMILY Terpenoid synthases 79 345 IPR008949 -
Phco4g01023 367 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 49 366 - -
Phco4g01023 367 SFLD Isoprenoid Synthase Type I 81 365 - -
Phco4g01023 367 ProSitePatterns Polyprenyl synthases signature 1. 152 168 IPR033749 -
Phco4g01023 367 ProSitePatterns Polyprenyl synthases signature 2. 285 297 IPR033749 -
Phco4g01023 367 FunFam Geranylgeranyl diphosphate synthase 73 367 - -
Phco4g01023 367 SFLD Polyprenyl Transferase Like 81 365 - -
Phco4g01023 367 Gene3D Farnesyl Diphosphate Synthase 69 367 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01023 Phco-Chr4 8119263 8120366 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01023 4 8119263 8120366 Phco4g01023 4 8119263 8120366 ECH
Phco8g00506 8 4948981 4950090 Phco4g01023 4 8119263 8120366 ECH
Phco4g01023 4 8119263 8120366 Phco8g00506 8 4948981 4950090 PCT