Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00337 ATGGGTAAAGCCCAAGATAAAATGTCTGAAGCAACCAATAGACAGATTATCAATAGCGCAAAATGCAAGACTGTAGAGAAATCAAATGAACATCCTGAATGGTTACCTGATGGTTGGATTGTGGAATCCAGAATTCGAAAAAGTGGTGCAAATATGGGATGTGGGTATAAGTGTTACATTGATCCAACTGGATGCAAATTCTACTCCAAACCTGAGGTGTTACGATATCTTGAGACTGTAAACAGCAACAGTCACAGTTCCAAGAAGGAAAAGATGCGCAAAAGCAATGATGCAGTTGAGAAGTCCACTGCTGAGGATTTACCACCTGATCAGATAGCAGATGTCAAGATGAAGAAGGGTAGTAATGGCTATAGAATAGATCCGGATACGGTCGAGAAGTCCCCAGTTGAGGATTTACCACCTGGGTGGACAATAGAAGCCAAGGTTAGGAAGGGTGGTACTGGCAATAGGAAAGATCTGTTTTATATAGATCCGGTGAGTGGATATGTATTTCGCTCCAAGAAGGATGCACTGCGCTATGTTAAGTCTGGTGATATAAGTGCGTGTGTGATTAAACCATTTAAACGACAAATCCAAGATGAAGACAAAGTATCTAATGCTGTTGAGAAGTCCACCATAGAGGATTTACCACCTGGGCAGATAACAAAAGTCAAAATTAGGAAGGGCAGTAATGGCAAAAGGATAGATCCGGATTCGGACAAGAAGTCCCAAGTTGAGGATTTACCACCTGGGTGGATAACTGAAGCCAAGGTTAGGAAGGGTGGTACTGGCAAGAAGAAAGATCTGTTTTATTTAGATCCAGTGAGTGGATATGTATTTCGCTCCAAGAAGGATGCACTGCGCTATGTTAATTCTGGCGATATAGATACGTGTGTGCTTAAACCATATAAAAGAGGAATCCAAGATGAAGACAACATAACTCAATCATCTACTGGCAAAAAACAGAAACTAAAGCAGTGTGCAACAAATCGCCGCCATTTTGTAGATGATCTGCTAGAGAAGAACCACGTTGTGAATATGATGGAGCATGCTAGTGAAAAGAATCACAGCAACCGTAGTTTATCCAAAACCAAGGAGTGCAATGTGGCTCGCCGTTTTTCACGGAGACTTTCTGGGGCTGCTGAACATGACCGGTTGACCTATGTGGTCAATGAACAGGCTCTTCAAGTTCCTAAAAGAGACTTCGGAAAAAATATAAGTATTTTAGACACTGATTTGACAAATAAATCATCTCAGCAGCCGAGTGGTGTCCTGGAAATTGGGCGTGAAGAGCAAGGAAAGGTGCTGTTGAACTCAAACAAATCCAGAACCAAGAAAGAGAAACAATTTTTTTGTCGTGCTTCAAAACGACTAGCTGGACTTCAACCCAAGCTGATGAGCAACTCCATTCCCCACAAAAAAGCTTATAAATGTAAAAAGTCCAAAGGTGCGGTCAAAGCAACCTTGCAGCAAAGTGATGGTCAGCCAGTTATGGAGCTTGCAGATCATGCATCAATAAATGGAGAGTCGTCAAATAAAGGCAGAAAACTTCCCGAAGCCCCACCCATAACTAGCAATCAACTGAAGAAATTTGATGACGAAGAAATAAATAAAGAGAAATCAGAACTTGTGCAATCCTTTGCATTTCATTATTCTTGGTCTGACCCATGCTTAGAATTTGCAATTCAGACCCTCACAGGTACATTACCGGTTGAAGATTCAACTGACAATGGACATGCCAGGGATTCTGAAACTAATACATCTCCCAAAAATAAGTTGGTTGAGAATGTTACAGGAAACAGCAGTGACAAAACCTCACGTGTAAATTCAAAGAAATCCAAGAACAAAAAGGAACTTACAGTGCCAAGGCATGGCAATGAACCTGAGGTACTTCCTACTGAAAAAACTGTTGAACACGCCCCTCAAAAGTCGTGCAATGCCAAAGTAGCTGCTACTGCGAGTTTAACTAATGGAGTGTCTGGGCATCCTTATGACAGGGAGGAATCCAAACTTGTTGTCCAGGCATCTGACAGGTTGTGTCGTGAATCATCGAGAAAGAGTGAGAAGTCATATGATACCAAAACGGTTCCCAATGAACAATTGCGGAGGCATGAAGATGAAAATGTCGATGATGAAAGATCATATTCACAGTTCCCCACACCTTTTGGGGACTCCTGGTCAGATCCTTGCTTAGAATTTGCAATTAAGACTCTTTCTGGTGCTTTGCCAGTTGATGCACCAGCTGCAGACATTTTACCTGCTGTGACTCCTGATGTTAGCGAGACCCCAAATAAGGAGTCACTTCAGAGTATGGAGCAGAAGAGCATCAATGCTGAAACTCGTGATAATCCCTACCAGTCCCAGACCAAGAAAGAGTTTAATACTGTTTGCCACACATCAAAACAGGTCCTGAACCAGCCCGAGGTGACGACCTACTCCACATATTGTGGAACTGATCCAAAGTTTGCAACTAGAGAGTCTTACAAGGATGGGGACAGTGTAGCCAGGAATTCTAATGGAATAGAGCCCCAACGTATTAAATCTGGGAACCCAATAGAAATTGATATAAACAAAACAATTCTCGAAGAAGAACCACAACCCGAAACAATAAACTACGATAATTCTGAAAGGGAATTCGGTGCTTCATTTATGGATTCTTGGTCAGATCCATGCCTAGAATTTGCATTTAATACTCTTTCGGGCACAATACCAGTAGAGGAAAATATAACAATTCCAGCATGTTTCCAGGAACGCGCGCATAGCCATGGCCAAAGAGGGGGTGTCTCGAAAGTACCGGAATTTGGATTTTCCAGCATTTCTCATAGTGGTATGTCATTTCACAATAATAATACAGGGGAGAAGTCCAACTCAGTGCAACAGTCACCAGCTAGTTCTTCTTTTCTCCCGCAGGAAAAACAAGGCCTGAACGGTTTCTGGGGGGTTGATCCTCCACAACCATACTTTCAGAATAATAATAATTTTCAGAGAAAGTGA 2994 0.4208 MGKAQDKMSEATNRQIINSAKCKTVEKSNEHPEWLPDGWIVESRIRKSGANMGCGYKCYIDPTGCKFYSKPEVLRYLETVNSNSHSSKKEKMRKSNDAVEKSTAEDLPPDQIADVKMKKGSNGYRIDPDTVEKSPVEDLPPGWTIEAKVRKGGTGNRKDLFYIDPVSGYVFRSKKDALRYVKSGDISACVIKPFKRQIQDEDKVSNAVEKSTIEDLPPGQITKVKIRKGSNGKRIDPDSDKKSQVEDLPPGWITEAKVRKGGTGKKKDLFYLDPVSGYVFRSKKDALRYVNSGDIDTCVLKPYKRGIQDEDNITQSSTGKKQKLKQCATNRRHFVDDLLEKNHVVNMMEHASEKNHSNRSLSKTKECNVARRFSRRLSGAAEHDRLTYVVNEQALQVPKRDFGKNISILDTDLTNKSSQQPSGVLEIGREEQGKVLLNSNKSRTKKEKQFFCRASKRLAGLQPKLMSNSIPHKKAYKCKKSKGAVKATLQQSDGQPVMELADHASINGESSNKGRKLPEAPPITSNQLKKFDDEEINKEKSELVQSFAFHYSWSDPCLEFAIQTLTGTLPVEDSTDNGHARDSETNTSPKNKLVENVTGNSSDKTSRVNSKKSKNKKELTVPRHGNEPEVLPTEKTVEHAPQKSCNAKVAATASLTNGVSGHPYDREESKLVVQASDRLCRESSRKSEKSYDTKTVPNEQLRRHEDENVDDERSYSQFPTPFGDSWSDPCLEFAIKTLSGALPVDAPAADILPAVTPDVSETPNKESLQSMEQKSINAETRDNPYQSQTKKEFNTVCHTSKQVLNQPEVTTYSTYCGTDPKFATRESYKDGDSVARNSNGIEPQRIKSGNPIEIDINKTILEEEPQPETINYDNSEREFGASFMDSWSDPCLEFAFNTLSGTIPVEENITIPACFQERAHSHGQRGGVSKVPEFGFSSISHSGMSFHNNNTGEKSNSVQQSPASSSFLPQEKQGLNGFWGVDPPQPYFQNNNNFQRK 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00337 997 Pfam Methyl-CpG binding domain 27 82 IPR001739 GO:0003677
Phco4g00337 997 Pfam Methyl-CpG binding domain 139 184 IPR001739 GO:0003677
Phco4g00337 997 Pfam Methyl-CpG binding domain 244 327 IPR001739 GO:0003677
Phco4g00337 997 MobiDBLite consensus disorder prediction 505 532 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 680 713 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 82 109 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 589 606 - -
Phco4g00337 997 SUPERFAMILY DNA-binding domain 137 189 IPR016177 GO:0003677
Phco4g00337 997 MobiDBLite consensus disorder prediction 229 245 - -
Phco4g00337 997 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 25 97 IPR001739 GO:0003677
Phco4g00337 997 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 129 201 IPR001739 GO:0003677
Phco4g00337 997 SUPERFAMILY DNA-binding domain 29 83 IPR016177 GO:0003677
Phco4g00337 997 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 238 310 IPR001739 GO:0003677
Phco4g00337 997 SUPERFAMILY DNA-binding domain 247 295 IPR016177 GO:0003677
Phco4g00337 997 MobiDBLite consensus disorder prediction 756 786 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 84 104 - -
Phco4g00337 997 PANTHER OS04G0193200 PROTEIN 240 587 IPR038945 -
Phco4g00337 997 Gene3D - 230 333 - -
Phco4g00337 997 Gene3D - 118 212 - -
Phco4g00337 997 Gene3D - 2 117 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 607 636 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 942 972 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 225 247 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 942 997 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 760 786 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 680 721 - -
Phco4g00337 997 MobiDBLite consensus disorder prediction 572 644 - -
Phco4g00337 997 CDD MBD 34 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00337 Phco-Chr4 2154631 2165431 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00337 4 2154631 2165431 Phco4g03258 4 53222655 53228418 PCT