Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00032 ATGAAGGTTTGGAGATGGTTGGTGAGTTTGTTTGTGGGGTTAGTGTTGCCTGTGTCTATAATGGGTCGATTCGTGGTGGAGAAGAACAGCCTGAGAGTGACGTCGCCGGACAAAATAAGAGGCACTCACGACAGTGCCATCGGGAACTTCGGCATCCCTCAATACGGTGGTAGCATGGCGGGGAACGTCGTTTACCCAAAGGATAACAAGAAAGGTTGCAAAGAGTTTGAAGACTCTGGAATTTCCTTCAAATCAACCCCCGGTGCTCTTCCCACCTTTGTTCTGCTCGATCGCGGAACTTGCTTCTTTGCATTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCGGTTCTTGTTGCAGATGATGTTGAGGAGCCCTTAATAACTATGGACACGCCTGAAGAGGATGGCTCATCTGCCAAATATGTGGAGAACATAACTATACCGTCTGCTCTTGTTGGAAAAAGTTTTGGTGAAAAATTAAAGGATGCCATAAGTGGTGGGGACATGGTCAACGTAAATCTTGATTGGAGAGAGTCTGTCCCTCACCCAGATGATCGTGTGGAGTATGAGTTGTGGAGCAACAGCAATGATGAGTGTGGAGTTAAGTGTGATATGTTGATGGAATTTGTGAAGGATTTCAAGGGTGCCGCGCAGATACTAGAGAAAGGCGGTTACACTCTGTTTACACCACATTATATAACTTGGTACTGTCCTCATGCTTTCACATTGAGCAAACAGTGCAAGTCTCAATGTATAAATCATGGAAGATATTGCGCTCCAGACCCTGAGCAGGACTTCAGCACAGGTTATGACGGGAAAGATGTGGTTATTGAAAATTTAAGACAGCTGTGTGTTTTCAAGGTGGCAAATGAAACTGGAAAGCCTTGGGTCTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCCATGAAGGAGAAAAAATACAATAAGGAATGTGCAGATGCTGTAATTAAATCACTGGGTCTTAATATTGAAAAGATTGGGAAATGCATGGGAGATCCAGATGCTGATACTGATAATCCTGTCTTGAAAGAAGAGCAAGATGCCCAAATTGGAAAGGGATCACGAGGTGATGTTACGATCTTGCCTACTCTTGTGGTCAATAATCGACAATATCGAGGAAAATTGGAGAAAGGGGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCCTGAGCACTGATATGGAGACAAATGAGTGCTTGACAAACAATGGTGGTTGTTGGCAGGATAAAACAGCTAACATCACTGCATGCAAGGATACATTCCGTGGGAGAGTATGTGAATGCCCCCTGGTTGACGGTGTCCAATTCAAGGGAGATGGTTATACTACTTGCGAAGCAAGAGGACTTGGGCGTTGCAAGATAAACAATGGAGGCTGTTGGCATGAGGCCCGGAATGGACATGCATTTTCTGCTTGTTTGGATAACGGAGGGGTCAAATGCCAGTGTCCCACAGGGTTTAAAGGTGATGGTGTCAAAAATTGTGAAGATATTGACGAATGCAAAGAGAAGAAGGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAGTAAAACTGGAAGTCAGGGAAGATCTACTTGGGCTGCATTTTGGCTGATTCTACTTGGCGTAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTATAGAATAAGGCAATACATGGATTCCGAAATCAGAGCAATCATGGCACAATATATGCCCCTGGACAGCCAAGCAGAAGTTCCAAATCATGTCAATGATCAGAGAGCATGA 1881 0.4487 MKVWRWLVSLFVGLVLPVSIMGRFVVEKNSLRVTSPDKIRGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFEDSGISFKSTPGALPTFVLLDRGTCFFALKVWNAQKAGASAVLVADDVEEPLITMDTPEEDGSSAKYVENITIPSALVGKSFGEKLKDAISGGDMVNVNLDWRESVPHPDDRVEYELWSNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTLFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETGKPWVWWDYVTDFQIRCPMKEKKYNKECADAVIKSLGLNIEKIGKCMGDPDADTDNPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSTDMETNECLTNNGGCWQDKTANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEARGLGRCKINNGGCWHEARNGHAFSACLDNGGVKCQCPTGFKGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYDCSCSGDLLYMRDHDTCISKTGSQGRSTWAAFWLILLGVVMIAGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNDQRA 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00032 626 FunFam Vacuolar-sorting receptor 1 21 185 - -
Phco4g00032 626 Gene3D Laminin 408 464 - -
Phco4g00032 626 CDD PA_VSR 49 176 - -
Phco4g00032 626 Gene3D Laminin 469 519 - -
Phco4g00032 626 Gene3D - 21 185 - -
Phco4g00032 626 SUPERFAMILY PA domain 93 169 IPR046450 -
Phco4g00032 626 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Phco4g00032 626 Pfam PA domain 60 162 IPR003137 -
Phco4g00032 626 Pfam Complement Clr-like EGF-like 498 518 IPR026823 -
Phco4g00032 626 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 3 615 - -
Phco4g00032 626 Gene3D Laminin 520 557 - -
Phco4g00032 626 CDD EGF_CA 515 543 - -
Phco4g00032 626 ProSitePatterns EGF-like domain signature 2. 499 513 IPR000742 -
Phco4g00032 626 FunFam vacuolar-sorting receptor 1 408 464 - -
Phco4g00032 626 SMART egfca_6 515 557 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00032 Phco-Chr4 223961 227794 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00032 4 223961 227794 Phco4g00032 4 223961 227794 ECH
Phco4g00032 4 223961 227794 Phco6g02751 6 48940506 48945945 PCT