Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02769 ATGACTTCAACCACCACGGATTCCGACTTTGCGTTCTTGGAATCTGTTCGAAAATACCTACTTGGACACGATTCCATCAACCTCATGCCTGCAACAACCCACCAAGTTGCTTCTCATGATCCACTTTCAAACCCTAAGTGCAATGGTGATCTCGAGAACGTTATTTTCCGCAGTGAGGATGCAACTGCTGTGGTGGCGCGTCATGTCCACGCCCCACAGACATGGAAGCATTACCGAGGTGTTAGGCGTAGGCCGTGGGGGAAGTTTGCCGCGGAGATAAGGGATCCAAATAAGAACGGAGCTAGGGTTTGGCTTGGAACTTTTGACACTGAAAAGAAAGCAGCTTTGGCTTACGACAAAGCAGCTTTCAAGATGCGTGGTCAAAAAGCTAAGTTGAATTTTCCTCATCTTATAGATTCTGATAACTGTGATACAGTGTCAGAACCGGTGATGGAAACAGCTTCTAAGAGGGAGTTGTCACAAAGTTTTGAACCATCCTCACCATCATCGTTGTGCTCAGATGATAGCTCAGAGTCACAAGGGACAAAGAGGAGGAAGAAGAACCTCACTGATCTATTGAATAAGTTAGCCAAGAACAGAAGCCAAGCCAAGGTTGCATATTGA 624 0.4615 MTSTTTDSDFAFLESVRKYLLGHDSINLMPATTHQVASHDPLSNPKCNGDLENVIFRSEDATAVVARHVHAPQTWKHYRGVRRRPWGKFAAEIRDPNKNGARVWLGTFDTEKKAALAYDKAAFKMRGQKAKLNFPHLIDSDNCDTVSEPVMETASKRELSQSFEPSSPSSLCSDDSSESQGTKRRKKNLTDLLNKLAKNRSQAKVAY 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02769 207 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Phco3g02769 207 Coils Coil 186 206 - -
Phco3g02769 207 PANTHER DNA-BINDING DOMAIN 68 183 IPR044808 GO:0003700|GO:0009873
Phco3g02769 207 FunFam Ethylene-responsive transcription factor 2 76 136 - -
Phco3g02769 207 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Phco3g02769 207 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Phco3g02769 207 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Phco3g02769 207 MobiDBLite consensus disorder prediction 154 188 - -
Phco3g02769 207 MobiDBLite consensus disorder prediction 154 177 - -
Phco3g02769 207 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Phco3g02769 207 CDD AP2 76 137 IPR001471 GO:0003700|GO:0006355
Phco3g02769 207 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Phco3g02769 207 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02769 Phco-Chr3 54089171 54089794 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco3g02769 AP2 6e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02769 3 54089171 54089794 Phco3g02769 3 54089171 54089794 ECH
Phco1g01967 1 59394546 59395160 Phco3g02769 3 54089171 54089794 PCT