Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01967 ATGGCCACCACAACAACATCATGTGATTTCTCATCGTTGGAATCTATTCAACACTATCTTCTTGAGCTTGAACCAGATTCCAACACCCTCATGAACGATTACAGCCCCCAAGCTTTCTATTCTCCAATGTGCAAACCATTCCCAAGCCCTACTTTGCAGAGTGTCCATGGTGCAGAGAACTTGCTGACATGCAAGGTAAAAGCGCGTGAGGGTCACGCGCCACCGGTGTGGAAGCGTTTCCGTGGTGTGAGGCGGAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGATCCAAAGAAGAATGGTGCGAGAATTTGGCTTGGAACTTATGAAACTGAAGAAGAAGCTGGTTTGGCTTATGATAAAGCAGCATTTAAGATGCGTGGTAACAAAGCTAAGCTAAATTTTCCTCATCTTATTGACTCTGATGTGGTTCTGAAGCCCGTTAGAATAAGCAAAGCTTCGAAAGAAAACACGTTGGAATCTTATTCATCGTTCTCACCATCTTCAGATGCAGAAGAAGGGTCGAAGAAAAGGAAGAACTTGGCTGAGTTGTTGAACAGGTTGGCCAAGAACAGAAGGCAAGTGCAGGTGTTTCAAACCAGTTTGCACTAA 615 0.4602 MATTTTSCDFSSLESIQHYLLELEPDSNTLMNDYSPQAFYSPMCKPFPSPTLQSVHGAENLLTCKVKAREGHAPPVWKRFRGVRRRPWGKFAAEIRDPKKNGARIWLGTYETEEEAGLAYDKAAFKMRGNKAKLNFPHLIDSDVVLKPVRISKASKENTLESYSSFSPSSDAEEGSKKRKNLAELLNRLAKNRRQVQVFQTSLH 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01967 204 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Phco1g01967 204 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Phco1g01967 204 SUPERFAMILY DNA-binding domain 79 138 IPR016177 GO:0003677
Phco1g01967 204 Coils Coil 172 192 - -
Phco1g01967 204 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Phco1g01967 204 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Phco1g01967 204 PANTHER DNA-BINDING DOMAIN 70 176 IPR044808 GO:0003700|GO:0009873
Phco1g01967 204 FunFam Ethylene-responsive transcription factor 2 78 138 - -
Phco1g01967 204 Pfam AP2 domain 79 129 IPR001471 GO:0003700|GO:0006355
Phco1g01967 204 CDD AP2 78 139 IPR001471 GO:0003700|GO:0006355
Phco1g01967 204 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01967 Phco-Chr1 59394546 59395160 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g01967 AP2 1.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01967 1 59394546 59395160 Phco1g01967 1 59394546 59395160 ECH
Phco1g01967 1 59394546 59395160 Phco3g02769 3 54089171 54089794 PCT