Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02767 ATGCATAAAAGCTCCTCACCAAGTTGTAGTAACAGAAACAAATCTATCTCCAAATCTGAGATGGATACTTACACCACGACTACGAATACGAATGCTACTTCAGAATTTGATATGACATTTTCGGACACTATTGAACATTACATGCTTCACGATGAAGCATGTGGTTTGAACAACAATGTTTTGGTCTCAAATGAGAATTGTTTGTCTGAGAAAGGTGTGGAGGGTGGTGGTAAACTAGAAGAGGAAGTTCCCAGAGGGACGAGGTACAAAGGAGTGAGGCGTAGGGCACATGGAAAGTTTGCTGCAGAGATAAAAGATCCAAACAGAAGTAATAGGATTTGGCTTGGGACTTTCGACACTGAAGAAGAAGCTGCTTTGGCTTATGACAATGCAGTTTTCAAGATCAGAGGGTCCAAATCCAAGCTCAATTTTCCTCACCTCATTCCACTATTGGATGCATCAAGCATCCACATGGCTGACCCTCCTTCTTCATCATCCACACCTGAGGATCGTTCAGAAGGGTCCAGGAAAAGGAAGGGAGTAGCTGGTTTGCTCAATAAATTAGCACATGAAAAAAACAGAATTTGA 588 0.4201 MHKSSSPSCSNRNKSISKSEMDTYTTTTNTNATSEFDMTFSDTIEHYMLHDEACGLNNNVLVSNENCLSEKGVEGGGKLEEEVPRGTRYKGVRRRAHGKFAAEIKDPNRSNRIWLGTFDTEEEAALAYDNAVFKIRGSKSKLNFPHLIPLLDASSIHMADPPSSSSTPEDRSEGSRKRKGVAGLLNKLAHEKNRI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02767 195 Gene3D AP2/ERF domain 87 146 IPR036955 GO:0003700|GO:0006355
Phco3g02767 195 SMART rav1_2 88 151 IPR001471 GO:0003700|GO:0006355
Phco3g02767 195 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Phco3g02767 195 PANTHER DNA-BINDING DOMAIN 35 171 IPR044808 GO:0003700|GO:0009873
Phco3g02767 195 MobiDBLite consensus disorder prediction 1 22 - -
Phco3g02767 195 MobiDBLite consensus disorder prediction 155 195 - -
Phco3g02767 195 SUPERFAMILY DNA-binding domain 88 146 IPR016177 GO:0003677
Phco3g02767 195 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Phco3g02767 195 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Phco3g02767 195 ProSiteProfiles AP2/ERF domain profile. 88 145 IPR001471 GO:0003700|GO:0006355
Phco3g02767 195 FunFam Ethylene-responsive transcription factor 2 87 146 - -
Phco3g02767 195 Pfam AP2 domain 87 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02767 Phco-Chr3 54082899 54083486 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco3g02767 AP2 9.3e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01966 1 59383280 59383864 Phco3g02767 3 54082899 54083486 PCT