Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01966 ATGGCCAATGATTCTTGTTCAGGTGTTGAATCATACGAGCTAGAACATGATCCCCACATTCTTGTAAATGTTTCCGACGAAGAAACCTTTTATTCTTCCTCGTACGAGAATCCTATAGCAAACCCTAGCCATGTCAATGATGCCACTCAATCATTTGCATGCATGGTGGAAGCACCTGTGGCAGCGCGTGAGGTGCACGCGCCTCCGAAGTGGAAACACTTCCGAGGCGTGAGGCGGCGGCCATGGGGGAAGTTTGCGGCGGAGATATGGGATCCGAAGAGAAAGCATGGAAGGGTTTGGCTGGGAACCTATGAGACTGAAGAAGAAGCAGGTTTAGCTTATGATAGGGCTGCTTTCAAGATGAGAGGTAGCAAAGCAAAGTTGAATTTTCCACACTTGATTGGATCCCACGCGCGGCCGGAGAGAGTGAGAGCGGCGGCAGTGGCTCCAAAGCCGAACCCGCCGGAGGCTTCTTTGCCTCCTTTGTCTGCGGCGGAGGATGGTTCAGAGCCACAAGGGTCAAAGAAAAGGAGAAACCTAGCTGATTTGCTTAATAGGTTAGCTAAGAATAGAAGACAAAGTTGA 585 0.5026 MANDSCSGVESYELEHDPHILVNVSDEETFYSSSYENPIANPSHVNDATQSFACMVEAPVAAREVHAPPKWKHFRGVRRRPWGKFAAEIWDPKRKHGRVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHARPERVRAAAVAPKPNPPEASLPPLSAAEDGSEPQGSKKRRNLADLLNRLAKNRRQS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01966 194 FunFam Ethylene-responsive transcription factor 2 72 132 - -
Phco1g01966 194 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Phco1g01966 194 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Phco1g01966 194 PANTHER DNA-BINDING DOMAIN 51 169 IPR044808 GO:0003700|GO:0009873
Phco1g01966 194 Gene3D AP2/ERF domain 72 132 IPR036955 GO:0003700|GO:0006355
Phco1g01966 194 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
Phco1g01966 194 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Phco1g01966 194 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Phco1g01966 194 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Phco1g01966 194 CDD AP2 72 133 IPR001471 GO:0003700|GO:0006355
Phco1g01966 194 MobiDBLite consensus disorder prediction 143 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01966 Phco-Chr1 59383280 59383864 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g01966 AP2 2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01966 1 59383280 59383864 Phco1g01966 1 59383280 59383864 ECH
Phco1g01966 1 59383280 59383864 Phco3g02767 3 54082899 54083486 PCT