Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02735 ATGCCTCCAAGGGTAGTGAAGAGAGGCGCGGCGAAGAGGGCATCGAGAGGATCCTCGAAGGCTGCACTTGAGAACCAGCGTGAGCCTGAAACTGCGGAAGTGGGGGAGAAAAATCATGCGCAAAATTCAGCTGTTGATGTTGGAGTGGAAGAGAAACACGTTGATGTGGACCAAGAGCCTTCGGAAGCTCCAAATGGGTCGGCTAAGATGGAAAACAATGAAGAGGAGGTTAAGGAGTCTTTAGATGAATATGAAAAAGGTGAACATTTAGATTTAGAGGATAATTATCCTGAGTATGAACCAGAGGAGTATGGTGGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTCAGGATGAGGCAGATGAATTAGAGGAAGAACCTGATGAGATAATAGGTGAAGAAGAGGGTGATACAGGTGAGGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGGAGAACATGCTGGTGAGGAGCATGAGCATGTGGAGGAAGAGGAACACCGTGAAGTTGTAAAGGAGAGGAGAAAGCGTAAGGAATTTGAAGTATTTGTGGGGGGACTAGATAAGGATGCTACTGAGCATGATCTGAAGAAGGTTTTCAGCAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGACTAGAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAGCAAGCGAAAAGAGCTGTGGTGGAGCTAAAAAATCCTGTGATTAATGGTAAACAGTGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTGAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAATGAGGGGATGAACCGAGGATTTGCATTTTTGGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCCTACAGGCGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCTGACTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCATCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTCGGAACATGCCAGCTGCTCGCAGGAAGAACTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATTACTAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCAAGGCCTCTTTCAAAACCTCTTCAGAGAGGCCGTGGGAAACATAATAATCATGGGGACTTTCGTTCTGGTCGCAATTCTGGAAGATTGCCAAGGCCTTCACGGAGTCGACCCGCTCCACGTAGTTATCCTCCTGCCCGTGTGGTTAGAGGCATTGGAAATCGTGCTCCACCAGTTAGACCTGTTAGTGTGAGAAGTAGACGTCCTGTCACATCCATGCTAGAAAGAGTCAGGCCAGTTGCTCCTCCAGCTAGAACCTATGACAGGAGATTGACTGCTCCTGCATATTCAAAAAGTGGCATGAAAAGAGACTATAGTCGACGTGAGGATCTACCGCCCCCAAGAGGTAGAGTTGCTGCAGATTATGGGTCTAGGGTAGCCTCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGATTCTGACTACCCTGAGCTACATAGAAGTACATCCCGTGCTGCACCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCATCCTCCTCCCCATCTAAGTTATCGAGAAGGACGCCCCCGTGATTACGAAACCATAGCTGGCTCAAAACGTCCGTATACTGCTATAGATGATGTTCCTCAACGGTATGATACTGGTGCCCGCCAATCAAGATCTCGTTTAGATTATGAATATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTGGGATATAGTGGCAGCAGAAGTTCGATTTCTAATCAAGAATTACATGGGACATATGGCAGTCGGCAGGGCATGAGTTATGGTGGAGGTTCTTTTGGTGGTAGTGACGGTGGTATGTACACATCGAATTATGGTGGTGATTATGTATCGCGTGGAAGTGATGTTGGTGGCCCAGCTATATGGGTGGAGGCGGCTCTGGGTCTTATTATTGAGATCTAA 2271 0.4487 MPPRVVKRGAAKRASRGSSKAALENQREPETAEVGEKNHAQNSAVDVGVEEKHVDVDQEPSEAPNGSAKMENNEEEVKESLDEYEKGEHLDLEDNYPEYEPEEYGGVDYDEKEIEQDEGQDEADELEEEPDEIIGEEEGDTGEEEVEYVYEEVEDDDDGEHAGEEHEHVEEEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFSKVGVVTEVRLMINPQTRRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHNNHGDFRSGRNSGRLPRPSRSRPAPRSYPPARVVRGIGNRAPPVRPVSVRSRRPVTSMLERVRPVAPPARTYDRRLTAPAYSKSGMKRDYSRREDLPPPRGRVAADYGSRVASQRHTSYRDYPARDSDYPELHRSTSRAAPKRGYVDDGYGQRFERHPPPHLSYREGRPRDYETIAGSKRPYTAIDDVPQRYDTGARQSRSRLDYEYGGSASQYGDAYGDRLGRSSLGYSGSRSSISNQELHGTYGSRQGMSYGGGSFGGSDGGMYTSNYGGDYVSRGSDVGGPAIWVEAALGLIIEI 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02735 756 Coils Coil 109 129 - -
Phco3g02735 756 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 26 704 - -
Phco3g02735 756 MobiDBLite consensus disorder prediction 430 507 - -
Phco3g02735 756 MobiDBLite consensus disorder prediction 544 558 - -
Phco3g02735 756 MobiDBLite consensus disorder prediction 1 177 - -
Phco3g02735 756 MobiDBLite consensus disorder prediction 577 599 - -
Phco3g02735 756 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 366 423 IPR000504 GO:0003723
Phco3g02735 756 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 335 IPR000504 GO:0003723
Phco3g02735 756 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 257 IPR000504 GO:0003723
Phco3g02735 756 MobiDBLite consensus disorder prediction 95 161 - -
Phco3g02735 756 FunFam RNA recognition water-stress protein1 354 479 - -
Phco3g02735 756 Gene3D - 356 475 IPR012677 -
Phco3g02735 756 Gene3D - 267 350 IPR012677 -
Phco3g02735 756 MobiDBLite consensus disorder prediction 69 94 - -
Phco3g02735 756 MobiDBLite consensus disorder prediction 606 625 - -
Phco3g02735 756 MobiDBLite consensus disorder prediction 162 177 - -
Phco3g02735 756 SUPERFAMILY RNA-binding domain, RBD 266 423 IPR035979 GO:0003676
Phco3g02735 756 SMART rrm1_1 268 347 IPR000504 GO:0003723
Phco3g02735 756 SMART rrm1_1 188 261 IPR000504 GO:0003723
Phco3g02735 756 SMART rrm1_1 365 440 IPR000504 GO:0003723
Phco3g02735 756 Coils Coil 67 90 - -
Phco3g02735 756 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 351 IPR000504 GO:0003723
Phco3g02735 756 MobiDBLite consensus disorder prediction 537 625 - -
Phco3g02735 756 SUPERFAMILY RNA-binding domain, RBD 182 265 IPR035979 GO:0003676
Phco3g02735 756 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 265 IPR000504 GO:0003723
Phco3g02735 756 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 446 IPR000504 GO:0003723
Phco3g02735 756 Gene3D - 131 261 IPR012677 -
Phco3g02735 756 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 126 267 - -
Phco3g02735 756 FunFam Heterogeneous nuclear ribonucleoprotein Q 268 350 - -
Phco3g02735 756 CDD RRM_SF 189 260 - -
Phco3g02735 756 CDD RRM_SF 366 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02735 Phco-Chr3 53772901 53777487 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01923 1 58875679 58880507 Phco3g02735 3 53772901 53777487 PCT