Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01923 ATGCCCCCGAAAACGGCGAAGCGTGGGTCCACGTCGAACGCCTCGAAGAGGGGTGGCAGAGGCGGCAGGGGAACCCCGAAGGGTGCGCAGAGCCAGCAGCACCATGAAGCTGCGGAAGAGGTGGTGAAGGTCGAGGAGAAACAACCCATTGTAGTTGTTGCTGAGGAGGAGCAACTCAAGGCGGTGGAAGAAGAGAACCCTGTGGTTGAAGAGAAACAGCTTGTGGTTGAAGAGAAAGAATCTGTTGTGGTGGTTGAGGATAAGGCTATTGATATGAACCAAATGGCTCCGGAGGCTGTGGAAGAAGCGTCCCATCTAGCTAATGGGTTGACTGCGGTGAAAAACAATGAAGAGGAAGTTAAGGAATCAATGGATGAATATGAGAAAGATGAACGCTTAGATTTGGAGGATAATGATCCTGAGTATGAAGCTGAGGAATATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGGTCATGAGGTGGGCAATGCAGTAGAGGAAGAAGAGGCTGAAGATAATTTAGGTGAAGAAGAGGGTGATACAGGTGAGGAAGAAGTTGAAGATGTTCATGACGAACTTGAGGGTGAAGAGGAGCATGAACATACTCGTGAGGAGCATGATCACCCAGACTTTGCAGATGTTGATGAAGAGGAACATCGAGAAGTTGTGAAGGAGAGGCGCAAGCGAAAAGAGTTTGAAGTTTTTGTTGGTGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTTGTTACAGAGGTCAGGCTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCTAAACGAGCTGTAGCGGAACTCAGAAATCCTGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGCCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGCTGAAACATTATGGAGTTACCAATGTTGAGGATTTGACCTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGGTTTGCATTTTTAGAATTTTCCTCTCGTTCTGATGCTATGGATGCCTTTAAGCGACTGCAGAAGAGGGATGTTGTGTTTGGAGTAGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCTTTTATTGACCCGGGAGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTACCTCCTTCATGGGATGAAGATTATGTCCGAGATCTTCTCAAGAAATATGGAGAGATTGAAAAGATTGAGCTAGCCAGGAACATGCCAGCTGCTCGTAGGAAGGATTATGGGTTTGTTACATTTGGCACACATGATGCTGCTGTAAAATGTGCTGATAGTATTACTGGCACAGAGTTGGGTGAAGGAGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCAAGACCACTTCAGAGAGGTCGTGGAAAACACATTAGTCGTGGTGATTATCGTTCTGGTCGAGGATCTGGAATGATGACAAGGCCTTCATGGAGCCGACCTGCACCTCGTACTTTTACTCGTGGCGCGAGAGGAGTTGGAAGTCGTGCTCCACCTGTCAGACCAGTTAGTGTGAGAGATAGACGCCCTATCATGTCCATACCAGCAAGAAGTAGGCCAGTGCCTCCTCCAACTAGATCTTATGATAGGAGACCAATTGCACCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATAGTCGGCGTGAGGATATACCGCCTCCAAGAAGTAGAGTTGCTGTAGATTATGGTTCTAGGGTGGTTTCTGAAAGAAGACCATCTTACAGGGATTATCCTGCCCGTGGTCCTGGTCCAGGCTACTCTGAGCTCCCTAGAAGCACATCTCGGGCTGCACCGAGGAGGGGCTATGTGGATGATGGATATAGCCAGAGATTTGAGAGGCCTCCACCTCCTCCCCCTCCCCATCTAAGTTATCGTGAAGGACGTCCCCGAGATTATGAAACTCTGTCTGGCTCTAAACGTGCTTATGCTGCTATAGATGATGTTCCTCCCCGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGATTAGACTATGACTATGGTGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTATGGGATATGGTGGTAGCAGCAGAAGTTCTATGTCTGGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGAGGTTCTTTTAATACTGGTGATGTTGGTGGCTTGTACTCATCAAGTTATGGCAGTGATTACATTTCCCGTGGAAGTGATGTTGGTGGCAGCTCATATTCGTCAGTGTATTCAAGCAGGGGTGTCGGTGGTGGTAGCAGTTATATGGGTGGTGGCGGATCAGGATCTTATTATTGA 2460 0.4626 MPPKTAKRGSTSNASKRGGRGGRGTPKGAQSQQHHEAAEEVVKVEEKQPIVVVAEEEQLKAVEEENPVVEEKQLVVEEKESVVVVEDKAIDMNQMAPEAVEEASHLANGLTAVKNNEEEVKESMDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNAVEEEEAEDNLGEEEGDTGEEEVEDVHDELEGEEEHEHTREEHDHPDFADVDEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSGRGSGMMTRPSWSRPAPRTFTRGARGVGSRAPPVRPVSVRDRRPIMSIPARSRPVPPPTRSYDRRPIAPAYPKSSMKRDYSRREDIPPPRSRVAVDYGSRVVSERRPSYRDYPARGPGPGYSELPRSTSRAAPRRGYVDDGYSQRFERPPPPPPPHLSYREGRPRDYETLSGSKRAYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGGSSRSSMSGQDSHGMYSSRQGMSYGGSFNTGDVGGLYSSSYGSDYISRGSDVGGSSYSSVYSSRGVGGGSSYMGGGGSGSYY 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01923 819 Coils Coil 110 133 - -
Phco1g01923 819 CDD RRM_SF 238 309 - -
Phco1g01923 819 MobiDBLite consensus disorder prediction 735 755 - -
Phco1g01923 819 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 10 818 - -
Phco1g01923 819 CDD RRM_SF 415 489 - -
Phco1g01923 819 Gene3D - 165 316 IPR012677 -
Phco1g01923 819 MobiDBLite consensus disorder prediction 117 227 - -
Phco1g01923 819 SUPERFAMILY RNA-binding domain, RBD 315 480 IPR035979 GO:0003676
Phco1g01923 819 FunFam Heterogeneous nuclear ribonucleoprotein Q 317 399 - -
Phco1g01923 819 MobiDBLite consensus disorder prediction 587 601 - -
Phco1g01923 819 FunFam RNA recognition water-stress protein1 403 524 - -
Phco1g01923 819 CDD RRM_SF 318 385 - -
Phco1g01923 819 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 170 316 - -
Phco1g01923 819 Gene3D - 317 399 IPR012677 -
Phco1g01923 819 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 413 495 IPR000504 GO:0003723
Phco1g01923 819 MobiDBLite consensus disorder prediction 495 679 - -
Phco1g01923 819 MobiDBLite consensus disorder prediction 786 819 - -
Phco1g01923 819 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 400 IPR000504 GO:0003723
Phco1g01923 819 MobiDBLite consensus disorder prediction 1 18 - -
Phco1g01923 819 SUPERFAMILY RNA-binding domain, RBD 231 314 IPR035979 GO:0003676
Phco1g01923 819 MobiDBLite consensus disorder prediction 165 198 - -
Phco1g01923 819 Gene3D - 403 521 IPR012677 -
Phco1g01923 819 MobiDBLite consensus disorder prediction 1 42 - -
Phco1g01923 819 MobiDBLite consensus disorder prediction 732 755 - -
Phco1g01923 819 MobiDBLite consensus disorder prediction 786 803 - -
Phco1g01923 819 Coils Coil 52 72 - -
Phco1g01923 819 SMART rrm1_1 317 396 IPR000504 GO:0003723
Phco1g01923 819 SMART rrm1_1 237 310 IPR000504 GO:0003723
Phco1g01923 819 SMART rrm1_1 414 489 IPR000504 GO:0003723
Phco1g01923 819 MobiDBLite consensus disorder prediction 199 227 - -
Phco1g01923 819 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 314 IPR000504 GO:0003723
Phco1g01923 819 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 384 IPR000504 GO:0003723
Phco1g01923 819 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 306 IPR000504 GO:0003723
Phco1g01923 819 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 415 480 IPR000504 GO:0003723
Phco1g01923 819 MobiDBLite consensus disorder prediction 129 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01923 Phco-Chr1 58875679 58880507 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01923 1 58875679 58880507 Phco1g01923 1 58875679 58880507 ECH
Phco1g01923 1 58875679 58880507 Phco3g02735 3 53772901 53777487 PCT