Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02643 ATGTCCCCTTCCATTCCCTCCCCTCACTTCACCCACCTTGGCCTTGGCTACTCCATCGCCATAGCCCTCGCCTTTCTCTTCCTCCTCTCAACCCTCCTCCTCTCCTCCTACCTCTGCTGCCGCGCCACCCGACACCGCAACCAAACAACCGCCATCACTACCGCCGCCGCCAACCCCTCCGACGGGGTTGTCCTGCCACGGGTCATCTTCGTGGCGGAGGACGATGAGGAGGACGAGGAGGCCAGCGTTGCGCTGGGGCTCGACCAGAGCGTGATTAATTCCTACCCCAGGTTCCAGTTCGACAAGGGCAACGCGCGGAATAGTAACGGCAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCCGAGTGCCGCCATTTCTTCCACCTCTGCTGCCTCGATTCCTGGCTCAGACTCAGAGGCTCCTGCCCCGTTTGCCGCAACTCCCCGCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTGGTACCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGACAGGAAGATATTGATGCTTTTTGGTCATCCCTAATTCAAACGCCGTCATTTCCTATTTCGATTTCAAATCTTCCCCGAGCCTGTGGTTCGGACACCCGAACCTCAACGTTCGCGACACATATAAAAGCCATACTGGGATTCGCACTGCCAACCCTACTCTCATCACTGCAACAACAACAACCACAGAAGAAGAGAACTACTTCCATTTCCGTGCTCCGAAATCGACGCACTAGGGTTAGGGTTCTTTCGATCTGCGAAATTCTCGGCTCAATGGCGGAGGAACCAGAAAGCACCGTCACCGGCGCCGCCGCCGAGGAATCGTTGCTGGATAAGATCAGCGAGAAGCTTCATGATCACGATTCCTCGTCCTCTTCGGATTCGGATTCGGATTCGGATTCCGAAAAAACCGTCACTTCGTCCGTTAAGGATAAGGTTTTCCGCCTCTTCGGCAGGGAGAGGCCCGTTCATTCCGTTTTGGGCGCCGGAAAACCTGCTGACGTGTTATTGTGGAGGAACAAGAAGATATCTGCTGGCGTGCTTGGCGGAGCCACTGCTGTTTGGGTCCTGTTTGAGTTGCTTGAGTATCACTTTCTTACTCTGGTGTGTCACATTTTGATACTGTTGCTCGCAGTTCTGTTCTTGTGGTCCAATGCTCATACTTTTATTCACAAATCTCCACCTCGCATTCCAGAAGTTCATCTTCCCGAGGAGCCAATCCTGCAAGTGGCATCCGTGTTGAGGATTGAAATCAACAGGGGATTTGCTGTTTTGCATAGTATTGGTTCTGGAAGAGATTTGAAGAAATTCCTAATGGTTATTGCTGGCGTTTGGATTCTATCAATTGTGGGGAACTGGTGCAACTTCTTGACCCTCTTCTATATAACTTTTATCTTGTTGCACACGGCTCCTGTGGTATATGAGAAGTACGAGGATAAGATAGATCCACTTGCTGAGAAGGCAGTTATTGAGATTAAAAAGCAGTATGCTGTGTTTGATTCTAAGGTCTTGAGTAAGATCCCAGTGGGTCCATTAAAAGCTAAGTTATCTTAG 1605 0.5165 MSPSIPSPHFTHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRNQTTAITTAAANPSDGVVLPRVIFVAEDDEEDEEASVALGLDQSVINSYPRFQFDKGNARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRRQEDIDAFWSSLIQTPSFPISISNLPRACGSDTRTSTFATHIKAILGFALPTLLSSLQQQQPQKKRTTSISVLRNRRTRVRVLSICEILGSMAEEPESTVTGAAAEESLLDKISEKLHDHDSSSSSDSDSDSDSEKTVTSSVKDKVFRLFGRERPVHSVLGAGKPADVLLWRNKKISAGVLGGATAVWVLFELLEYHFLTLVCHILILLLAVLFLWSNAHTFIHKSPPRIPEVHLPEEPILQVASVLRIEINRGFAVLHSIGSGRDLKKFLMVIAGVWILSIVGNWCNFLTLFYITFILLHTAPVVYEKYEDKIDPLAEKAVIEIKKQYAVFDSKVLSKIPVGPLKAKLS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02643 534 SMART ring_2 115 156 IPR001841 -
Phco3g02643 534 Pfam Ring finger domain 113 157 IPR001841 -
Phco3g02643 534 MobiDBLite consensus disorder prediction 302 321 - -
Phco3g02643 534 ProSiteProfiles Reticulon domain profile. 349 534 IPR003388 -
Phco3g02643 534 SUPERFAMILY RING/U-box 114 161 - -
Phco3g02643 534 CDD RING-H2_EL5-like 115 157 - -
Phco3g02643 534 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Phco3g02643 534 PANTHER RETICULON 316 525 - -
Phco3g02643 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Phco3g02643 534 Pfam Reticulon 350 505 IPR003388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02643 Phco-Chr3 53041048 53049655 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02643 3 53041048 53049655 Phco3g02643 3 53041048 53049655 ECH
Phco3g02643 3 53041048 53049655 Phco1g00680 1 6186058 6186633 PCT