Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00680 ATGTCCTCCTTCAACTCCTTCTCCCCTCCACCCCCCACCCCTTACTTCACCAACCTAGGCTTCGGCTACTCCATCGCCATCGCCCTCGGAGTCCTCTTCCTCATCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACCCTCCGCCACCGCAACAACAACCACCACCACCGCCGCCGCCGCCGCCACAACCCCCACGCCCCTGATGGCATCGTTCTCCCGCGCGTTATCTTCGTCGCCGAGGACGACGACGACGGCGCCCGACAGAACGACGCTGTCTCCGGCCTCGAACAGGCCGTCATAAACTCCTACCCCAAGTTCCCCTTCACGAAAGACGGCGGCTACGACACCACGTGCTCCATCTGTCTCTGCGACTACAAGGATACGGAGATGCTGAGGATGATGCCCGAGTGTCGACACTACTTTCACCTCTGCTGTCTCGACCCCTGGCTCAAGCTCAACGGCTCCTGCCCCGTGTGCCGGAACTCCCCCATGCCCACGCCGCTGTCCACGCCGCTGCAGGAGGTGGTACCGCTCTCGCAGTACGCAGCCGATGGCAGGGGGAGGAGGTGA 576 0.6354 MSSFNSFSPPPPTPYFTNLGFGYSIAIALGVLFLISTLILSSYLCCRTLRHRNNNHHHRRRRRHNPHAPDGIVLPRVIFVAEDDDDGARQNDAVSGLEQAVINSYPKFPFTKDGGYDTTCSICLCDYKDTEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAADGRGRR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00680 191 PANTHER RING-H2 FINGER PROTEIN ATL67 13 188 IPR044289 GO:0016567|GO:0016740
Phco1g00680 191 SMART ring_2 120 161 IPR001841 -
Phco1g00680 191 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Phco1g00680 191 SUPERFAMILY RING/U-box 110 166 - -
Phco1g00680 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 167 IPR013083 -
Phco1g00680 191 Pfam Ring finger domain 119 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00680 Phco-Chr1 6186058 6186633 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00680 1 6186058 6186633 Phco1g00680 1 6186058 6186633 ECH
Phco3g02643 3 53041048 53049655 Phco1g00680 1 6186058 6186633 PCT